rename api files

openproblems-bio · Sep 17, 2024 · 0b9f736 · 0b9f736
1 parent 8871e39
commit 0b9f736
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Showing 8 changed files with 11 additions and 11 deletions.
diff --git a/common b/common
diff --git a/src/api/comp_control_method.yaml b/src/api/comp_control_method.yaml
@@ -13,11 +13,11 @@ info:
       in the task.
 arguments:
   - name: --input_train
-    __merge__: file_train_h5ad.yaml
+    __merge__: file_train.yaml
     required: true
     direction: input
   - name: --input_test
-    __merge__: file_test_h5ad.yaml
+    __merge__: file_test.yaml
     required: true
     direction: input
   - name: "--input_solution"

diff --git a/src/api/comp_data_processor.yaml b/src/api/comp_data_processor.yaml
@@ -12,11 +12,11 @@ arguments:
     direction: input
     required: true
   - name: "--output_train"
-    __merge__: file_train_h5ad.yaml
+    __merge__: file_train.yaml
     direction: output
     required: true
   - name: "--output_test"
-    __merge__: file_test_h5ad.yaml
+    __merge__: file_test.yaml
     direction: output
     required: true
   - name: "--output_solution"

diff --git a/src/api/comp_method.yaml b/src/api/comp_method.yaml
@@ -8,11 +8,11 @@ info:
       A method to predict the task effects.
 arguments:
   - name: --input_train
-    __merge__: file_train_h5ad.yaml
+    __merge__: file_train.yaml
     required: true
     direction: input
   - name: "--input_test"
-    __merge__: file_test_h5ad.yaml
+    __merge__: file_test.yaml
     direction: input
     required: true
   - name: --output

diff --git a/src/api/file_test_h5ad.yaml → src/api/file_test.yaml b/src/api/file_test_h5ad.yaml → src/api/file_test.yaml
diff --git a/src/api/file_train_h5ad.yaml → src/api/file_train.yaml b/src/api/file_train_h5ad.yaml → src/api/file_train.yaml
diff --git a/src/workflows/process_datasets/config.vsh.yaml b/src/workflows/process_datasets/config.vsh.yaml
@@ -11,11 +11,11 @@ argument_groups:
   - name: Outputs
     arguments:
       - name: "--output_train"
-        __merge__: /src/api/file_train_h5ad.yaml
+        __merge__: /src/api/file_train.yaml
         required: true
         direction: output
       - name: "--output_test"
-        __merge__: /src/api/file_test_h5ad.yaml
+        __merge__: /src/api/file_test.yaml
         required: true
         direction: output
       - name: "--output_solution"

diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml
@@ -5,12 +5,12 @@ argument_groups:
   - name: Inputs
     arguments:
       - name: "--input_train"
-        __merge__: /src/api/file_train_h5ad.yaml
+        __merge__: /src/api/file_train.yaml
         type: file
         direction: input
         required: true
       - name: "--input_test"
-        __merge__: /src/api/file_test_h5ad.yaml
+        __merge__: /src/api/file_test.yaml
         type: file
         direction: input
         required: true
+1 −1		scripts/create_component
+1 −1		scripts/create_task_readme
+1 −1		scripts/sync_resources
+28 −0		scripts/upgrade_config