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## Describe your changes | ||
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<!-- Describe your changes --> | ||
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## Checklist before requesting a review | ||
- [ ] I have performed a self-review of my code | ||
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- Check the correct box. Does this PR contain: | ||
- [ ] Breaking changes | ||
- [ ] New functionality (new method, new metric, ...) | ||
- [ ] Major changes | ||
- [ ] Minor changes | ||
- [ ] Bug fixes | ||
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- [ ] Proposed changes are described in the CHANGELOG.md | ||
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- [ ] CI Tests succeed and look good! |
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# task-dge-perturbation-prediction 0.1.0 | ||
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Initial release of the DGE Perturbation Prediction task. Initial components: | ||
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* `src/task/process_dataset`: Compute the DGE data from the raw single-cell counts using Limma. | ||
* `src/task/control_methods`: Baseline control methods: sample, ground_truth, baseline_zero. | ||
* `src/task/methods`: DGE perturbation prediction methods: random_forest. | ||
* `src/task/metrics`: Evaluation metrics: mean_rowwise_rmse. | ||
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