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add changelog and PR template
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rcannood committed Apr 18, 2024
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17 changes: 17 additions & 0 deletions .github/PULL_REQUEST_TEMPLATE.md
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## Describe your changes

<!-- Describe your changes -->

## Checklist before requesting a review
- [ ] I have performed a self-review of my code

- Check the correct box. Does this PR contain:
- [ ] Breaking changes
- [ ] New functionality (new method, new metric, ...)
- [ ] Major changes
- [ ] Minor changes
- [ ] Bug fixes

- [ ] Proposed changes are described in the CHANGELOG.md

- [ ] CI Tests succeed and look good!
10 changes: 10 additions & 0 deletions CHANGELOG.md
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# task-dge-perturbation-prediction 0.1.0

Initial release of the DGE Perturbation Prediction task. Initial components:

* `src/task/process_dataset`: Compute the DGE data from the raw single-cell counts using Limma.
* `src/task/control_methods`: Baseline control methods: sample, ground_truth, baseline_zero.
* `src/task/methods`: DGE perturbation prediction methods: random_forest.
* `src/task/metrics`: Evaluation metrics: mean_rowwise_rmse.


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