Correct file types for area calc output and norm by area input

openproblems-bio · Sep 17, 2024 · 2155fce · 2155fce
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commit 2155fce
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diff --git a/src/cell_volume_methods/alpha_shapes/config.vsh.yaml b/src/cell_volume_methods/alpha_shapes/config.vsh.yaml
@@ -14,7 +14,7 @@ arguments:
   - name: --output
     required: true
     direction: output
-    __merge__: /src/api/file_spatialdata_assigned.yaml
+    __merge__: /src/api/file_cell_volumes.yaml
 
 resources:
   - type: python_script

diff --git a/src/normalisation_methods/normalise_by_volume/config.vsh.yaml b/src/normalisation_methods/normalise_by_volume/config.vsh.yaml
@@ -10,6 +10,7 @@ arguments:
     type: file
     description: H5ad with an obs column of cell volumes calculated from spatial transcriptomics data.
     required: true
+    __merge__: /src/api/file_cell_volumes.yaml
   - name: --output
     required: true
     direction: output