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openproblems-bio / task_ist_preprocessing Public

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Test

Merge pull request #7 from openproblems-bio/add_pciseq #142

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Merge pull request #7 from openproblems-bio/add_pciseq

Merge pull request #7 from openproblems-bio/add_pciseq #142

Summary
Jobs
- List components to test
  
  Test (fetch_task_execution, core, src/core/fetch_task_execution/config.vsh.yaml, src/core/fetch_t...
  
  Test (similarity, metrics, src/metrics/similarity/config.vsh.yaml, src/metrics/similarity/, pytho...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (crop_region, datasets/processors, src/datasets/processors/crop_region/config.vsh.yaml, src/...
  
  Test (vizgen_merscope, datasets/loaders, src/datasets/loaders/vizgen_merscope/config.vsh.yaml, sr...
  
  Test (tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/datase...
  
  Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...
  
  Test (binning, methods_segmentation, src/methods_segmentation/binning/config.vsh.yaml, src/method...
  
  Test (custom_segmentation, methods_segmentation, src/methods_segmentation/custom_segmentation/con...
  
  Test (cellpose, methods_segmentation, src/methods_segmentation/cellpose/config.vsh.yaml, src/meth...
  
  Test (alpha_shapes, methods_calculate_cell_volume, src/methods_calculate_cell_volume/alpha_shapes...
  
  Test (basic_count_aggregation, methods_count_aggregation, src/methods_count_aggregation/basic_cou...
  
  Test (normalize_by_volume, methods_normalization, src/methods_normalization/normalize_by_volume/c...
  
  Test (basic_transcript_assignment, methods_transcript_assignment, src/methods_transcript_assignme...
  
  Test (pciseq_transcript_assignment, methods_transcript_assignment, src/methods_transcript_assignm...
  
  Test (ssam, methods_cell_type_annotation, src/methods_cell_type_annotation/ssam/config.vsh.yaml, ...
  
  Test (basic_qc_filter, methods_qc_filter, src/methods_qc_filter/basic_qc_filter/config.vsh.yaml, ...
  
  Test (gene_efficiency_correction, methods_expression_correction, src/methods_expression_correctio...
Run details
- Usage
- Workflow file

Usage Workflow file

Annotations

1 warning

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

build / Test (ssam, methods_cell_type_annotation, src/methods_cell_type_annotation/ssam/config.vsh.yaml, ...

build / Test (ssam, methods_cell_type_annotation, src/methods_cell_type_annotation/ssam/config.vsh.yaml, ...

succeeded Dec 23, 2024 in 3m 27s

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