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fixes to scripts and components #72

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Job	Run time
build / Build target branch	29s
build / Build (basic_count_aggregation, methods_count_aggregation, executable, docker\|native, src/methods...	12m 1s
build / Build (normalize_by_volume, methods_normalization, executable, docker\|native, src/methods_normali...	9m 19s
build / Build (basic_transcript_assignment, methods_transcript_assignment, executable, docker\|native, src...	3m 14s
build / Build (process_dataset, data_processors, executable, docker\|native, src/data_processors/process_d...	2m 1s
build / Build (alpha_shapes, methods_calculate_cell_volume, executable, docker\|native, src/methods_calcul...	11m 59s
build / Build (gene_efficiency_correction, methods_expression_correction, executable, docker\|native, src/...	10m 40s
build / Build (ssam, methods_cell_type_annotation, executable, docker\|native, src/methods_cell_type_annot...	11m 38s
build / Build (custom_segmentation, methods_segmentation, executable, docker\|native, src/methods_segmenta...	2m 56s
build / Build (allen_brain_cell_atlas, datasets/loaders, executable, docker\|native, src/datasets/loaders/...	2m 49s
build / Build (tenx_xenium, datasets/loaders, executable, docker\|native, src/datasets/loaders/tenx_xenium...	2m 2s
build / Build (crop_region, datasets/processors, executable, docker, src/datasets/processors/crop_region/...	2m 25s
build / Build (similarity, metrics, executable, docker\|native, src/metrics/similarity/config.vsh.yaml, ta...	11m 9s
build / Build (basic_qc_filter, methods_qc_filter, executable, docker\|native, src/methods_qc_filter/basic...	12m 39s
	1h 35m 21s