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openproblems-bio / task_ist_preprocessing Public

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Test

Adjust inputs and outputs for building the proper workflow graph and … #58

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Adjust inputs and outputs for building the proper workflow graph and …

Adjust inputs and outputs for building the proper workflow graph and … #58

Summary
Jobs
- List components to test
  
  Test (subset_reference, data_processors, src/data_processors/subset_reference/config.vsh.yaml, sr...
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (crop_region, data_processors, src/data_processors/crop_region/config.vsh.yaml, src/data_pro...
  
  Test (alpha_shapes, cell_volume_methods, src/cell_volume_methods/alpha_shapes/config.vsh.yaml, sr...
  
  Test (basic, assignment_methods, src/assignment_methods/basic/config.vsh.yaml, src/assignment_met...
  
  Test (basic, count_aggregation, src/count_aggregation/basic/config.vsh.yaml, src/count_aggregatio...
  
  Test (normalise_by_volume, normalisation_methods, src/normalisation_methods/normalise_by_volume/c...
  
  Test (gene_efficiency_correction, expr_correction_methods, src/expr_correction_methods/gene_effic...
  
  Test (ssam, celltype_annotation_methods, src/celltype_annotation_methods/ssam/config.vsh.yaml, sr...
  
  Test (custom, segmentation_methods, src/segmentation_methods/custom/config.vsh.yaml, src/segmenta...
  
  Test (example, segmentation_methods, src/segmentation_methods/example/config.vsh.yaml, src/segmen...
  
  Test (allen_brain_cell_atlas, datasets/loaders, src/datasets/loaders/allen_brain_cell_atlas/confi...
  
  Test (load_tenx_xenium, datasets/loaders, src/datasets/loaders/tenx_xenium/config.vsh.yaml, src/d...
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