single omics workflow added-3

openproblems-bio · Aug 29, 2024 · facb2c6 · facb2c6
1 parent f0cc724
commit facb2c6
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diff --git a/src/workflows/run_benchmark_single_omics/config.vsh.yaml b/src/workflows/run_benchmark_single_omics/config.vsh.yaml
@@ -12,6 +12,9 @@ functionality:
         - name: --multiomics_rna
           type: file
           direction: input
+        - name: --multiomics_atac
+          type: file
+          direction: input
         - name: --perturbation_data
           type: file
           direction: input

diff --git a/src/workflows/run_benchmark_single_omics/main.nf b/src/workflows/run_benchmark_single_omics/main.nf
@@ -77,6 +77,7 @@ workflow run_wf {
       // use 'fromState' to fetch the arguments the component requires from the overall state
       fromState: [
         multiomics_rna: "multiomics_rna",
+        multiomics_atac: "multiomics_atac",
         tf_all: "tf_all",
       ],
       // use 'toState' to publish that component's outputs to the overall state