scenic+ memory bug

openproblems-bio · Aug 27, 2024 · f1920c7 · f1920c7
1 parent 82d1465
commit f1920c7
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Showing 3 changed files with 20 additions and 20 deletions.
diff --git a/runs.ipynb b/runs.ipynb
@@ -3358,7 +3358,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 48,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -3393,14 +3393,14 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 30,
+   "execution_count": 49,
    "metadata": {},
    "outputs": [
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "Processing groups: 100%|██████████| 4/4 [00:08<00:00,  2.23s/it]\n"
+      "Processing groups: 100%|██████████| 4/4 [00:09<00:00,  2.36s/it]\n"
      ]
     }
    ],
@@ -3419,7 +3419,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 31,
+   "execution_count": 50,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -3428,18 +3428,18 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 32,
+   "execution_count": 51,
    "metadata": {},
    "outputs": [],
    "source": [
-    "n_iter = 10\n",
+    "n_iter = 100\n",
     "# net_corr = net.sample(len(tfs), axis=1)\n",
     "# net_corr"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 33,
+   "execution_count": 52,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -3452,7 +3452,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 34,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -3464,7 +3464,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 35,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3639,7 +3639,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 36,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3683,7 +3683,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 37,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -3696,7 +3696,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 38,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3725,7 +3725,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 39,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3745,7 +3745,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 40,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3765,7 +3765,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 41,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3795,7 +3795,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 42,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3824,7 +3824,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 43,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -3845,7 +3845,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 44,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [

diff --git a/src/methods/multi_omics/scenicplus/config.vsh.yaml b/src/methods/multi_omics/scenicplus/config.vsh.yaml
@@ -38,4 +38,4 @@ platforms:
   - type: native
   - type: nextflow
     directives:
-      label: [midtime,himem,hicpu]
+      label: [midtime,midmem,midcpu]
diff --git a/src/methods/multi_omics/scenicplus_ns/config.vsh.yaml b/src/methods/multi_omics/scenicplus_ns/config.vsh.yaml
@@ -35,4 +35,4 @@ functionality:
 platforms:
   - type: nextflow
     directives:
-      label: [ midtime, midmem, lowcpu ]
+      label: [ midtime, midmem, midcpu ]