figr: test-2

openproblems-bio · Jul 24, 2024 · 96259e5 · 96259e5
1 parent 260b240
commit 96259e5
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/src/methods/figr/config.novsh.yaml → src/methods/figr/config.vsh.yaml b/src/methods/figr/config.novsh.yaml → src/methods/figr/config.vsh.yaml
diff --git a/src/methods/figr/run.sh b/src/methods/figr/run.sh
@@ -1,2 +1,2 @@
 viash build src/methods/figr/config.vsh.yaml -p docker -o bin_figr
-bin_figr/figr --multiomics_rna resources/grn-benchmark/multiomics_r/rna.rds --multiomics_atac resources/grn-benchmark/multiomics_r/atac.rds --prediction bin_figr/prediction.csv --cell_topic resources/grn-benchmark/supp/cell_topic.csv
+bin_figr/figr --multiomics_rna resources_test/grn-benchmark/multiomics_r/rna.rds --multiomics_atac resources_test/grn-benchmark/multiomics_r/atac.rds --prediction bin_figr/prediction.csv --cell_topic resources_test/grn-benchmark/supp/cell_topic.csv
diff --git a/src/methods/scglue/config.vsh.yaml → src/methods/scglue/config.novsh.yaml b/src/methods/scglue/config.vsh.yaml → src/methods/scglue/config.novsh.yaml
@@ -57,7 +57,7 @@ functionality:
     - name: --temp_dir
       type: string
       direction: input
-      default: output
+      default: output/figr/
     - name: --num_workers
       type: integer
       direction: input