test scglue

openproblems-bio · Jul 24, 2024 · 53b0178 · 53b0178
1 parent c15622e
commit 53b0178
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diff --git a/src/methods/figr/config.vsh.yaml → src/methods/figr/config.novsh.yaml b/src/methods/figr/config.vsh.yaml → src/methods/figr/config.novsh.yaml
@@ -20,6 +20,7 @@ functionality:
           - name: dummpy
             type: string
             required: false
+        test_default: resources_test/grn-benchmark/multiomics_r/rna.rds
       required: true
     - name: --multiomics_atac
       type: file
@@ -32,6 +33,7 @@ functionality:
           - name: dummpy
             type: string
             required: false
+        test_default: resources_test/grn-benchmark/multiomics_r/atac.rds
       required: true
     - name: --prediction
       __merge__: ../../api/file_prediction.yaml

diff --git a/src/methods/figr/script.R b/src/methods/figr/script.R
@@ -17,6 +17,8 @@ par <- list(
   peak_gene = "output/figr/peak_gene.csv",
   prediction= "output/figr/prediction.csv"
 )
+
+print(par)
 # meta <- list(
 #   functionality_name = "my_method_r"
 # )

diff --git a/src/methods/scglue/config.novsh.yaml → src/methods/scglue/config.vsh.yaml b/src/methods/scglue/config.novsh.yaml → src/methods/scglue/config.vsh.yaml