baseline models are structured. util added:attemp4

openproblems-bio · Sep 19, 2024 · 2da5f28 · 2da5f28
1 parent 8473413
commit 2da5f28
Show file tree

Hide file tree

Showing 5 changed files with 4 additions and 6 deletions.
diff --git a/nextflow.config b/nextflow.config
diff --git a/src/api/comp_method.yaml b/src/api/comp_method.yaml
@@ -58,9 +58,6 @@ functionality:
       default: false
       description: subset rna seq data to only 7000 hvgs to reduce dimensionality
 
-  resources:
-    - path: /src/utils/util.py
-
   test_resources:
     - type: python_script
       path: /src/common/component_tests/run_and_check_output.py

diff --git a/src/control_methods/pearson/config.vsh.yaml b/src/control_methods/pearson/config.vsh.yaml
@@ -11,6 +11,8 @@ functionality:
     - type: python_script
       path: script.py
 
+    - path: /src/utils/util.py
+
 platforms:
   - type: docker
     image: ghcr.io/openproblems-bio/base_python:1.0.4

diff --git a/src/control_methods/pearson_causal/config.vsh.yaml b/src/control_methods/pearson_causal/config.vsh.yaml
@@ -10,6 +10,7 @@ functionality:
   resources:
     - type: python_script
       path: script.py
+    - path: /src/utils/util.py
 
 platforms:
   - type: docker

diff --git a/src/control_methods/positive_control/config.vsh.yaml b/src/control_methods/positive_control/config.vsh.yaml
@@ -15,6 +15,7 @@ functionality:
   resources:
     - type: python_script
       path: script.py
+    - path: /src/utils/util.py
 
 platforms:
   - type: docker