Skip to content

Commit

Permalink
readme updated
Browse files Browse the repository at this point in the history
  • Loading branch information
janursa committed Sep 8, 2024
1 parent 8ca8dfd commit 2a1f7dc
Show file tree
Hide file tree
Showing 3 changed files with 27 additions and 10 deletions.
16 changes: 11 additions & 5 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,10 @@ This file is automatically generated from the tasks's api/*.yaml files.
Do not edit this file directly.
-->

Benchmarking GRN inference methods
Benchmarking GRN inference methods The full documentation is hosted on
[ReadTheDocs](https://openproblems-grn-task.readthedocs.io/en/latest/index.html).
[![Documentation
Status](https://readthedocs.org/projects/grn-inference-benchmarking/badge/?version=latest.png)](https://grn-inference-benchmarking.readthedocs.io/en/latest/?badge=latest)

Path to source:
[`src`](https://github.com/openproblems-bio/task_grn_inference/tree/main/src)
Expand Down Expand Up @@ -100,10 +103,13 @@ approaches to assess both accuracy and comprehensiveness.

## Authors & contributors

| name | roles |
|:------------------|:-------|
| Jalil Nourisa | author |
| Robrecht Cannoodt | author |
| name | roles |
|:------------------|:------------|
| Jalil Nourisa | author |
| Robrecht Cannoodt | author |
| Antoine Passimier | contributor |
| Christian Arnold | contributor |
| Marco Stock | contributor |

## API

Expand Down
4 changes: 0 additions & 4 deletions src/api/comp_metric.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -26,15 +26,11 @@ functionality:
default: ridge
description: name of regretion to use
multiple: false
info:
test_default: ridge
- name: --subsample
type: integer
direction: input
default: -2
description: number of samples randomly drawn from perturbation data
info:
test_default: 200
- name: --max_workers
type: integer
direction: input
Expand Down
17 changes: 16 additions & 1 deletion src/api/task_info.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,9 @@ description: |
Due to its flexible nature, the platform can incorporate various benchmark datasets and evaluation methods, using either prior knowledge or feature-based approaches. In the current version, due to the absence of standardized prior knowledge, we use a feature-based approach to benchmark GRNs. Our evaluation utilizes standardized datasets for GRN inference and evaluation, employing multiple regression analysis approaches to assess both accuracy and comprehensiveness.
summary: Benchmarking GRN inference methods
summary: |
Benchmarking GRN inference methods
The full documentation is hosted on [ReadTheDocs](https://openproblems-grn-task.readthedocs.io/en/latest/index.html). [![Documentation Status](https://readthedocs.org/projects/grn-inference-benchmarking/badge/?version=latest)](https://grn-inference-benchmarking.readthedocs.io/en/latest/?badge=latest)
readme: |
## Installation
Expand Down Expand Up @@ -58,5 +60,18 @@ authors:
info:
github: rcannood
orcid: "0000-0003-3641-729X"
- name: Antoine Passimier
roles: [ contributor ]
info:
github: AntoinePassemiers
- name: Christian Arnold
roles: [ contributor ]
info:
github: chrarnold
- name: Marco Stock
roles: [ contributor ]
info:
github: stkmrc



0 comments on commit 2a1f7dc

Please sign in to comment.