Move dependency reposotry to viash config

openproblems-bio · Sep 19, 2024 · eef6d6d · eef6d6d
1 parent ecca414
commit eef6d6d
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Showing 3 changed files with 7 additions and 9 deletions.
diff --git a/_viash.yaml b/_viash.yaml
@@ -71,6 +71,12 @@ authors:
       github: KaiWaldrant
       orcid: "0009-0003-8555-1361"
 
+repositories:
+  - name: openproblems
+    type: github
+    repo: openproblems-bio/openproblems
+    tag: build/main
+
 viash_version: 0.9.0
 
 config_mods: |

diff --git a/src/workflows/process_datasets/config.vsh.yaml b/src/workflows/process_datasets/config.vsh.yaml
@@ -24,10 +24,7 @@ resources:
   - path: /common/nextflow_helpers/helper.nf
 dependencies:
   - name: common/check_dataset_schema
-    repository:
-      type: github
-      repo: openproblems-bio/openproblems
-      tag: build/main
+    repository: openproblems
   - name: data_processors/process_dataset
 runners:
   - type: nextflow
diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml
@@ -64,10 +64,5 @@ dependencies:
   - name: methods/magic
   - name: metrics/mse
   - name: metrics/poisson
-repositories:
-  - name: openproblems
-    type: github
-    repo: openproblems-bio/openproblems
-    tag: build/main
 runners:
   - type: nextflow