set numpy<2

openproblems-bio · Sep 19, 2024 · c0cbc94 · c0cbc94
1 parent 781295f
commit c0cbc94
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/src/methods/magic/config.vsh.yaml b/src/methods/magic/config.vsh.yaml
@@ -58,7 +58,7 @@ engines:
     image: openproblems/base_python:1.0.0
     setup:
       - type: python
-        pip: [scprep, magic-impute, scipy, scikit-learn<1.2]
+        pip: [scprep, magic-impute, scipy, scikit-learn<1.2, numpy<2]
 runners:
   - type: executable
   - type: nextflow

diff --git a/src/metrics/mse/config.vsh.yaml b/src/metrics/mse/config.vsh.yaml
@@ -25,6 +25,7 @@ engines:
         pypi:
           - scikit-learn
           - scprep
+          - numpy<2
 runners:
   - type: executable
   - type: nextflow

diff --git a/src/metrics/poisson/config.vsh.yaml b/src/metrics/poisson/config.vsh.yaml
@@ -23,7 +23,8 @@ engines:
     setup:
       - type: python
         pypi: 
-        - scprep
+          - scprep
+          - numpy<2
 runners:
   - type: executable
   - type: nextflow