fix typo

openproblems-bio · Oct 2, 2024 · b3c841b · b3c841b
1 parent 0bbd043
commit b3c841b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/data_processors/process_dataset/script.py b/src/data_processors/process_dataset/script.py
@@ -42,9 +42,9 @@
     print(f">> Randomly subsampling observations to {par['n_obs_limit']}", flush=True)
     print(f">> Setting seed to {par['seed']}", flush=True)
     random.seed(par["seed"])
-    obs_filt = np.ones(dtype=np.bool_, shape=adata.n_obs)
+    obs_filt = np.ones(dtype=np.bool_, shape=adata_output.n_obs)
     obs_index = np.random.choice(np.where(obs_filt)[0], par["n_obs_limit"], replace=False)
-    adata_output = adata[obs_index].copy()
+    adata_output = adata_output[obs_index].copy()
 
 # remove all layers except for counts
 print(">> Remove all layers except for counts", flush=True)