fix shared mem config (#409)

* fix shared mem config * docker test * update docker test * update docker test * fix docker test * undo docker test
openproblems-bio · Mar 19, 2024 · 282f0b3 · 282f0b3
1 parent 31f6b55
commit 282f0b3
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/src/wf_utils/labels_tw.config b/src/wf_utils/labels_tw.config
@@ -26,13 +26,13 @@ process {
     disk = { 200.GB * task.attempt } 
   }
   withLabel: lowsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.05}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.05)}" : ""}
   }
   withLabel: midsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.1}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.1)}" : ""}
   }
   withLabel: highsharedmem {
-    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size=${task.memory.mega * 0.25}mb" : ""}
+    containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.25)}" : ""}
   }
 }