Fix 67 make watertight #141
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python application | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| paths: | |
| - 'src/**' | |
| - 'tests/**' | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| env: | |
| PYTHONPATH: '/usr/local/lib' | |
| jobs: | |
| build: | |
| env: | |
| PYTHONPATH: "/usr/local/lib/python${{matrix.pyv}}/site-packages" | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| pyv: ["3.8","3.9","3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{matrix.pyv}} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{matrix.pyv}} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 build pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: build and install moab | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install gcc cmake make build-essential cython3 libeigen3-dev libnetcdf-dev libnetcdf19 libnetcdf-mpi-dev libnetcdf-mpi-19 python3-netcdf4 libhdf5-103 libhdf5-cpp-103 libhdf5-dev python3-setuptools python3-build python3-pip libglu1-mesa | |
| git clone --single-branch --branch 5.3.1 --depth 1 https://bitbucket.org/fathomteam/moab.git | |
| cd moab | |
| mkdir build | |
| cd build | |
| cmake .. -DENABLE_HDF5=ON -DENABLE_PYMOAB=ON -DBUILD_SHARED_LIBS=ON -DENABLE_FORTRAN=OFF -DCMAKE_INSTALL_PREFIX=/usr/local | |
| make | |
| sudo make install | |
| cd pymoab | |
| sudo env "PATH=$PATH" python setup.py install | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=moab | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude=moab | |
| - name: Build, pip-install, and test-import CAD_to_OpenMC with dependencies. | |
| run: | | |
| python -m build | |
| pip install dist/CAD_to_OpenMC*.tar.gz | |
| python -c 'import CAD_to_OpenMC.assembly' | |
| - name: Run Tests | |
| run: | | |
| pytest tests |