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[PRE REVIEW]: Imbalance: A comprehensive multi-interface Julia toolbox to address class imbalance #5971

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editorialbot opened this issue Oct 22, 2023 · 25 comments
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Julia pre-review TeX Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning waitlisted Submissions in the JOSS backlog due to reduced service mode.

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editorialbot commented Oct 22, 2023

Submitting author: @EssamWisam (Essam )
Repository: https://github.com/JuliaAI/Imbalance.jl
Branch with paper.md (empty if default branch): paper
Version: v0.1.2
Editor: @jbytecode
Reviewers: @sylvaticus, @ArneTillmann
Managing EiC: Arfon Smith

Status

status

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HTML: <a href="https://joss.theoj.org/papers/0b2c4dc93c666b0809bfe3443ea7f640"><img src="https://joss.theoj.org/papers/0b2c4dc93c666b0809bfe3443ea7f640/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/0b2c4dc93c666b0809bfe3443ea7f640/status.svg)](https://joss.theoj.org/papers/0b2c4dc93c666b0809bfe3443ea7f640)

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Thanks for submitting your paper to JOSS @EssamWisam. Currently, there isn't a JOSS editor assigned to your paper.

@EssamWisam if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

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@editorialbot editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Oct 22, 2023
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

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Software report:

github.com/AlDanial/cloc v 1.88  T=0.14 s (868.2 files/s, 298657.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Julia                           67           1563            806           6301
Markdown                        21           1434              0           3196
Jupyter Notebook                20              0          27731           1342
TeX                              1             22              0            145
YAML                             7              3              6            143
TOML                             4              5              0            106
Sass                             1             26              0             80
Python                           1             15             10             43
Bourne Shell                     1              0              0              9
JSON                             1              0              0              6
CSS                              1              0              8              1
-------------------------------------------------------------------------------
SUM:                           125           3068          28561          11372
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

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Wordcount for paper.md is 1448

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1007/978-3-540-75171-7_2 is OK

MISSING DOIs

- 10.1109/icoacs.2016.7563084 may be a valid DOI for title: Effective prediction of three common diseases by combining SMOTE with Tomek links technique for imbalanced medical data
- 10.1109/tsmcb.2008.2007853 may be a valid DOI for title: Exploratory Undersampling for Class-Imbalance Learning
- 10.46586/tches.v2019.i1.209-237 may be a valid DOI for title: The Curse of Class Imbalance and Conflicting Metrics with Machine Learning for Side-channel Evaluations
- 10.1613/jair.953 may be a valid DOI for title: SMOTE: Synthetic Minority Over-sampling Technique
- 10.1007/11538059_91 may be a valid DOI for title: Borderline-SMOTE: A New Over-Sampling Method in Imbalanced Data Sets Learning
- 10.1016/j.inffus.2013.12.003 may be a valid DOI for title: RWO-Sampling: A random walk over-sampling approach to imbalanced data classification
- 10.1007/s10618-012-0295-5 may be a valid DOI for title: Training and assessing classification rules with imbalanced data
- 10.1109/tit.1968.1054155 may be a valid DOI for title: The condensed nearest neighbor rule (Corresp.)
- 10.1016/j.knosys.2013.01.018 may be a valid DOI for title: Analysing the classification of imbalanced data-sets with multiple classes: Binarization techniques and ad-hoc approaches

INVALID DOIs

- https://doi.org/10.1016/j.neucom.2019.06.100 is INVALID because of 'https://doi.org/' prefix

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia
Submitting author: @sylvaticus
Handling editor: @terrytangyuan (Retired)
Reviewers: @ablaom, @ppalmes
Similarity score: 0.8239

A Julia package for bilevel optimization problems
Submitting author: @matbesancon
Handling editor: @poulson (Retired)
Reviewers: @HaoZeke, @vissarion
Similarity score: 0.8169

AuDoLab: Automatic document labelling and classification for extremely unbalanced data
Submitting author: @ArneTillmann
Handling editor: @arfon (Active)
Reviewers: @linuxscout, @pps121
Similarity score: 0.8166

Flux: Elegant machine learning with Julia
Submitting author: @MikeInnes
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @ysimillides
Similarity score: 0.8144

JMcDM: A Julia package for multiple-criteria decision-making tools
Submitting author: @jbytecode
Handling editor: @drvinceknight (Active)
Reviewers: @brunaw, @sylvaticus
Similarity score: 0.8127

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before before considering asking the reviewers of these papers to review again for JOSS.

@arfon arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Oct 22, 2023
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arfon commented Oct 22, 2023

@EssamWisam – thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

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arfon commented Jan 20, 2024

@editorialbot invite @jbytecode as editor

👋 @jbytecode – would you be willing to edit this submission for JOSS?

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Invitation to edit this submission sent!

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@editorialbot assign me as editor

@arfon - sure!

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Assigned! @jbytecode is now the editor

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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia
Submitting author: @sylvaticus
Handling editor: @terrytangyuan (Retired)
Reviewers: @ablaom, @ppalmes
Similarity score: 0.8203

AuDoLab: Automatic document labelling and classification for extremely unbalanced data
Submitting author: @ArneTillmann
Handling editor: @arfon (Active)
Reviewers: @linuxscout, @pps121
Similarity score: 0.8155

A Julia package for bilevel optimization problems
Submitting author: @matbesancon
Handling editor: @poulson (Retired)
Reviewers: @HaoZeke, @vissarion
Similarity score: 0.8138

Flux: Elegant machine learning with Julia
Submitting author: @MikeInnes
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @ysimillides
Similarity score: 0.8102

JMcDM: A Julia package for multiple-criteria decision-making tools
Submitting author: @jbytecode
Handling editor: @drvinceknight (Active)
Reviewers: @brunaw, @sylvaticus
Similarity score: 0.8096

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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arfon commented Jan 20, 2024

💥 thanks @jbytecode!

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@EssamWisam - Hello, thank you for submitting your work to JOSS. I am the handling editor for this submission. The editorial bot has identified some previously published works that are similar to yours. Initially, I will attempt to invite the authors of these works to serve as reviewers. If we are unable to assign at least two reviewers through this process, I will then ask you to provide a list of potential reviewers from the suggested reviewers list. Thank you in advance.

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👋👋👋 Dear @sylvaticus, @ArneTillmann, @matbesancon, @MikeInnes 👋👋👋

Would you be willing to assist in reviewing this submission for JOSS (Journal of Open Source Software)?

JOSS publishes articles about open source research software. The submission I'd like you to review is titled:

Imbalance: A comprehensive multi-interface Julia toolbox to address class imbalance

You can find more information at the top of this Github issue (#5971).

The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. If you have any questions please let me know.

This is the pre-review issue. After setting at least 2 reviewers we will start the review process in a separate thread. In that thread, there will be 23 check items for each single reviewer.

Thank you in advance!

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I'm in....

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@editorialbot add @sylvaticus as reviewer

@sylvaticus - Thank you!

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@sylvaticus added to the reviewers list!

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I'd also like to be of service tho I am very busy up until a month from now. If you can wait, I am happy to review your submission.

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@editorialbot add @ArneTillmann as reviewer

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@ArneTillmann added to the reviewers list!

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@editorialbot start review

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OK, I've started the review over in #6310.

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