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[PRE REVIEW]: surtvep: An R package for estimating time-varying effects #5644

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editorialbot opened this issue Jul 10, 2023 · 40 comments
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[PRE REVIEW]: surtvep: An R package for estimating time-varying effects #5644

editorialbot opened this issue Jul 10, 2023 · 40 comments
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HTML pre-review R TeX Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning waitlisted Submissions in the JOSS backlog due to reduced service mode.

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editorialbot commented Jul 10, 2023 •
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Submitting author: @LingfengLuo0510 (Lingfeng Luo)
Repository: https://github.com/UM-KevinHe/surtvep
Branch with paper.md (empty if default branch): JOSS
Version: v1.0.0
Editor: @osorensen
Reviewers: @adibender, @turgeonmaxime
Managing EiC: Kevin M. Moerman

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status

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HTML: <a href="https://joss.theoj.org/papers/cfccdf9c4b2e69546eafb629fc48dacb"><img src="https://joss.theoj.org/papers/cfccdf9c4b2e69546eafb629fc48dacb/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/cfccdf9c4b2e69546eafb629fc48dacb/status.svg)](https://joss.theoj.org/papers/cfccdf9c4b2e69546eafb629fc48dacb)

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Thanks for submitting your paper to JOSS @LingfengLuo0510. Currently, there isn't a JOSS editor assigned to your paper.

@LingfengLuo0510 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

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@editorialbot editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Jul 10, 2023
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

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Checking the BibTeX entries failed with the following error:

No paper file path

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Software report:

github.com/AlDanial/cloc v 1.88  T=0.04 s (197.7 files/s, 88490.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
XML                              1              0            133           1781
HTML                             1             84              5            644
TeX                              1             28              9            218
Markdown                         2             48              0             96
YAML                             1              1              2             29
R                                1             11             18             26
-------------------------------------------------------------------------------
SUM:                             7            172            167           2794
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

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Failed to discover a valid open source license

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Failed to discover a Statement of need section in paper

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⚠️ An error happened when generating the pdf. Paper file not found.

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@editorialbot generate pdf

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⚠️ An error happened when generating the pdf. Paper file not found.

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arfon commented Jul 23, 2023

@LingfengLuo0510 – please merge your default branch (with all of the source code) into your JOSS branch. Also, please rename your paper to be paper.md so @editorialbot can detect the paper.

Finally, we're managing a backlog of submissions right now and so please be patient while we wait for an editor to become available.

@arfon arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Jul 23, 2023
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@editorialbot add @osorensen as editor

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Assigned! @osorensen is now the editor

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@editorialbot generate pdf

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⚠️ An error happened when generating the pdf. Paper file not found.

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@LingfengLuo0510 – please merge your default branch (with all of the source code) into your JOSS branch. Also, please rename your paper to be paper.md so @editorialbot can detect the paper.

Finally, we're managing a backlog of submissions right now and so please be patient while we wait for an editor to become available.

@LingfengLuo0510, I'm the editor of this submission now. Please let me know when this issue is fixed, after which I can do an initial read of the paper and start looking for suitable reviewers.

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LingfengLuo0510 commented Jul 23, 2023 via email

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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LingfengLuo0510 commented Jul 23, 2023 via email

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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LingfengLuo0510 commented Jul 23, 2023 via email

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👋 @WeakCha @turgeonmaxime @adibender, would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

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LingfengLuo0510 commented Jul 24, 2023 via email

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Thanks a lot for letting me know this @LingfengLuo0510. @WeakCha, you can thus ignore this request.

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Hello, I can review.

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@editorialbot add @adibender as reviewer

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@adibender added to the reviewers list!

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@osorensen I'm also available to review

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osorensen commented Jul 24, 2023 •
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@editorialbot add @turgeonmaxime as reviewer

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I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

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@editorialbot add @turgeonmaxime as reviewer

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@turgeonmaxime added to the reviewers list!

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@editorialbot start review

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OK, I've started the review over in #5688.

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LingfengLuo0510 commented Aug 13, 2023 via email

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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LingfengLuo0510 commented Aug 13, 2023 via email

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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@LingfengLuo0510, you should probably generate the pdf in the review issue, #5688

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LingfengLuo0510 commented Dec 18, 2023 via email

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

TEfits: Nonlinear regression for time-evolving indices
Submitting author: @akcochrane
Handling editor: @cMadan (Active)
Reviewers: @ejhigson, @paul-buerkner
Similarity score: 0.8310

MatSurv: Survival analysis and visualization in MATLAB
Submitting author: @jhcreed
Handling editor: @cMadan (Active)
Reviewers: @dsurujon, @ManuelaS
Similarity score: 0.8291

survxai: an R package for structure-agnostic explanations of survival models
Submitting author: @AleksandraDabrowska
Handling editor: @yochannah (Retired)
Reviewers: @hiendn, @dirmeier
Similarity score: 0.8278

tipr: An R package for sensitivity analyses for unmeasured confounders
Submitting author: @LucyMcGowan
Handling editor: @fabian-s (Active)
Reviewers: @gcskoenig, @MichaelSchomaker
Similarity score: 0.8256

ccostr: An R package for estimating mean costs with censored data
Submitting author: @LarsHernandez
Handling editor: @csoneson (Active)
Reviewers: @joethorley, @tgerke
Similarity score: 0.8206

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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