[PRE REVIEW]: Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping #4194

editorialbot · 2022-02-23T15:48:39Z

Submitting author: @sebastientourbier (Sebastien Tourbier)
Repository: https://github.com/connectomicslab/connectomemapper3
Branch with paper.md (empty if default branch):
Version: v3.0.3
Editor: @osorensen
Reviewers: @adbartni, @jsheunis
Managing EiC: Arfon Smith

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editorialbot · 2022-02-23T15:48:40Z

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editorialbot · 2022-02-23T15:49:12Z

Software report:

github.com/AlDanial/cloc v 1.88  T=1.58 s (107.1 files/s, 80766.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              3              0             25          65623
Python                          95           6525           9108          25397
TeX                              1            212              0           2392
reStructuredText                18           1331            409           2152
XML                              2              0              0           1854
YAML                             9             77            115           1720
Jupyter Notebook                 7              0           5607           1196
INI                             10             54              0            917
CSS                              1              0              9            723
Markdown                         3             81              0            493
HTML                             3             50              2            314
JSON                             6              0              0            228
Dockerfile                       1             43            111            192
DOS Batch                        1             23              1            166
make                             1             24              6            123
Bourne Shell                     7             15             40             66
JavaScript                       1              0              1              1
-------------------------------------------------------------------------------
SUM:                           169           8435          15434         103557
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

editorialbot · 2022-02-23T15:49:18Z

Wordcount for paper.md is 2738

editorialbot · 2022-02-23T15:49:33Z

⚠️ An error happened when generating the pdf.

editorialbot · 2022-02-23T15:49:40Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5281/zenodo.3475969 is OK
- 10.1016/j.neuroimage.2009.06.060 is OK
- 10.1101/188706 is OK
- 10.1006/cbmr.1996.0014 is OK
- 10.1016/J.NEUROIMAGE.2011.08.056 is OK
- 10.1038/sdata.2014.49 is OK
- 10.3389/fninf.2014.00090 is OK
- 10.1038/nn.4500 is OK
- 10.3389/fninf.2018.00052 is OK
- 10.1109/TMI.2008.922696 is OK
- 10.3389/fnhum.2015.00458 is OK
- 10.1371/journal.pone.0080713 is OK
- 10.1002/jmri.1076 is OK
- 10.5281/zenodo.3571874 is OK
- 10.1007/s12021-016-9299-4 is OK
- 10.3389/fninf.2019.00001 is OK
- 10.1089/brain.2013.0154 is OK
- 10.1038/s41592-018-0235-4 is OK
- 10.1016/j.neuroimage.2013.08.048 is OK
- 10.1109/GlobalSIP.2013.6736878 is OK
- 10.3389/978-2-88945-472-3 is OK
- 10.1785/gssrl.81.3.530 is OK
- 10.3389/fnins.2012.00149 is OK
- 10.3389/fnhum.2013.00042 is OK
- 10.3389/978-2-88945-821-9 is OK
- 10.1007/s10827-018-0702-z is OK
- 10.1007/978-0-8176-8379-5_19 is OK
- 10.1016/j.neuroimage.2011.10.018 is OK
- 10.1016/j.neubiorev.2014.05.009 is OK
- 10.1371/journal.pone.0048121 is OK
- 10.3389/fninf.2011.00003 is OK
- 10.1016/j.tics.2014.11.008 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1101/631952 is OK
- 10.1016/J.NEUROIMAGE.2017.04.015 is OK
- 10.1016/j.neuroimage.2015.04.042 is OK
- 10.1101/188706 is OK
- 10.1038/s41562-016-0021 is OK
- 10.1002/hbm.21333 is OK
- 10.1101/611590 is OK
- 10.1016/j.neuroimage.2006.01.021 is OK
- 10.1016/j.neuroimage.2015.06.018 is OK
- 10.1016/j.neuroimage.2017.12.073 is OK
- 10.1038/sdata.2014.49 is OK
- 10.1016/J.NEUROIMAGE.2012.06.005 is OK
- 10.1016/j.neuroimage.2018.05.064 is OK
- 10.1016/j.neuroimage.2020.116678 is OK
- 10.1016/j.neuroimage.2015.02.065 is OK
- 10.1002/hbm.24468 is OK
- 10.1371/journal.pcbi.1005209 is OK
- 10.1002/nbm.3752 is OK
- 10.1016/j.neuroimage.2018.11.018 is OK
- 10.3389/fninf.2014.00054 is OK
- 10.1007/978-1-4939-5611-1_30 is OK
- 10.1016/j.neulet.2017.10.003 is OK
- 10.1016/j.neuroimage.2013.04.084 is OK
- 10.1016/j.neuroimage.2011.09.081 is OK
- 10.1146/annurev-biodatasci-072018-021237 is OK
- 10.1038/mp.2017.92 is OK
- 10.1016/j.neuroimage.2016.06.035 is OK
- 10.1016/j.neuroimage.2013.05.109 is OK
- 10.1016/j.nic.2019.03.005 is OK
- 10.1007/s10278-018-0089-4 is OK
- 10.1145/1272996.1273025 is OK
- 10.1016/j.neuroimage.2016.05.047 is OK
- 10.3389/fninf.2012.00009 is OK
- 10.1002/nbm.3785 is OK
- 10.1002/nbm.3734 is OK
- 10.1016/j.ejrad.2015.11.004 is OK
- 10.3389/fninf.2014.00008 is OK
- 10.1162/netn_a_00111 is OK
- 10.1162/netn_e_00052 is OK
- 10.3389/fnins.2017.00656 is OK
- 10.1101/802629 is OK
- 10.1007/s10548-018-0691-2 is OK
- 10.3389/fninf.2017.00017 is OK
- 10.1016/j.neuroimage.2010.01.091 is OK
- 10.1109/TMI.2015.2430850 is OK
- 10.1016/b978-0-12-398398-5.00009-6 is OK
- 10.1186/s13742-015-0072-7 is OK
- 10.1007/s11682-018-9994-x is OK
- 10.1007/978-3-642-31208-3_6 is OK
- 10.1016/J.NEUROIMAGE.2011.09.015 is OK
- 10.1109/TMI.2006.880587 is OK
- 10.1073/PNAS.1922248117 is OK
- 10.1073/PNAS.1922248117 is OK
- 10.1016/j.neuroimage.2013.04.087 is OK
- 10.1002/mrm.10268 is OK
- 10.1016/j.clinph.2020.09.018 is OK
- 10.1016/j.neuroimage.2017.10.034 is OK
- 10.1002/nbm.3841 is OK
- 10.1038/sdata.2018.270 is OK
- 10.1002/nbm.1940080707 is OK
- 10.1109/MPUL.2011.2181023 is OK
- 10.1016/j.neuroimage.2016.03.046 is OK
- 10.1038/s41467-018-04614-w is OK
- 10.3389/fninf.2012.00014 is OK
- 10.1016/j.jneumeth.2011.09.031 is OK
- 10.3389/fnins.2013.00267 is OK
- 10.1016/j.neuroimage.2013.04.016 is OK
- 10.1038/nn.4134 is OK
- 10.1016/j.neuroimage.2017.03.055 is OK
- 10.1155/2018/5340717 is OK
- 10.1016/b978-0-12-398398-5.00008-4 is OK
- 10.1016/j.jneumeth.2010.01.014 is OK
- 10.1371/journal.pone.0184661 is OK
- 10.1371/journal.pone.0184661 is OK
- 10.1002/ima.22005 is OK
- 10.1017/nws.2013.19 is OK
- 10.1016/j.media.2010.07.001 is OK
- 10.1016/j.media.2010.07.001 is OK
- 10.1038/nbt.3820 is OK
- 10.3389/fninf.2011.00013 is OK
- 10.1016/j.neuroimage.2012.03.072 is OK
- 10.1101/2020.10.15.341495 is OK
- 10.1101/443556 is OK
- 10.3389/fninf.2012.00022 is OK
- 10.1002/eap.1822 is OK
- 10.1371/journal.pcbi.1006064 is OK
- 10.1038/nrn3475 is OK
- 10.1007/978-3-319-46720-7_24 is OK
- 10.1016/j.neuroimage.2008.04.186 is OK
- 10.1002/mrm.20279 is OK
- 10.1101/2020.09.04.282269 is OK
- 10.1016/j.neuroimage.2013.12.012 is OK
- 10.1002/uog.5256 is OK
- 10.3389/fninf.2015.00012 is OK
- 10.1002/hbm.23843 is OK
- 10.3389/fninf.2017.00076 is OK
- 10.1016/j.neuroimage.2008.05.002 is OK
- 10.1016/j.neuroimage.2007.02.016 is OK
- 10.5281/ZENODO.3712762 is OK
- 10.1038/nrn.2016.167 is OK
- 10.1093/gigascience/gix013 is OK
- 10.1001/jamainternmed.2017.5763 is OK
- 10.11138/FNeur/2017.32.2.097 is OK
- 10.1016/j.neuroimage.2015.06.092 is OK
- 10.1371/journal.pone.0177459 is OK
- 10.21105/joss.01294 is OK
- 10.1016/j.neuroimage.2013.04.056 is OK
- 10.1002/hbm.22083 is OK
- 10.1016/j.media.2007.06.004 is OK
- 10.3389/fnhum.2015.00059 is OK
- 10.1038/sdata.2016.44 is OK
- 10.1007/s11571-017-9445-1 is OK
- 10.1038/s41467-017-01285-x is OK
- 10.1371/journal.pone.0113838 is OK
- 10.1371/journal.pone.0038234 is OK
- 10.1016/j.neuroimage.2012.02.018 is OK
- 10.1371/journal.pcbi.0010042 is OK
- 10.1073/pnas.1801582115 is OK
- 10.3389/fninf.2014.00044 is OK
- 10.3389/fpls.2011.00034 is OK
- 10.1016/j.neuroimage.2013.04.127 is OK
- 10.1371/journal.pbio.3000066 is OK
- 10.1038/s41597-019-0073-y is OK
- 10.1109/NER.2019.8717114 is OK
- 10.1016/j.neuroimage.2013.03.053 is OK
- 10.1016/j.neuroimage.2013.03.053 is OK
- 10.1038/nn.4550 is OK
- 10.1016/j.neuroimage.2016.11.052 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1016/j.neuroimage.2010.07.024 is OK
- 10.1016/j.media.2013.03.009 is OK
- 10.1016/j.media.2013.03.009 is OK
- 10.1016/j.neuroimage.2018.07.070 is OK
- 10.1016/j.neuroimage.2019.116207 is OK
- 10.1126/scitranslmed.aaf5027 is OK
- 10.1371/journal.pmed.0020124 is OK
- 10.1162/netn_a_00147 is OK
- 10.1162/netn_a_00218 is OK
- doi10.18112/openneuro.ds003505.v1.0.3 is OK
- doi10.18112/openneuro.ds003505.v1.1.1 is OK
- 10.1038/s41597-021-01116-1 is OK
- 10.12688/f1000research.20887.3 is OK
- 10.1101/2022.01.31.478189 is OK
- 10.1162/netn_a_00114 is OK

MISSING DOIs

- 10.1007/978-3-319-61358-1_9 may be a valid DOI for title: Diffusion MRI Anisotropy : Modeling , Analysis and Interpretation
- 10.1126/sciadv.aba8245 may be a valid DOI for title: A new method for accurate in vivo mapping of human brain connections using microstructural and anatomical information
- 10.1101/gr.1239303 may be a valid DOI for title: Cytoscape: a software environment for integrated models of biomolecular interaction networks

INVALID DOIs

- 10.1016/S1053-81190291132-8 is INVALID
- 10.1038/nn.4502.Network is INVALID
- 10.1162/netn is INVALID
- https://doi.org/10.1016/j.neuroimage.2012.01.021 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1101/551739 is INVALID because of 'https://doi.org/' prefix
- 10.1002/SICI1099-149219990212151AID-NBM5463.0.CO2-E is INVALID
- 10.1126/science.1213847.Reproducible is INVALID
- https://doi.org/10.1016/j.clinph.2019.09.006 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.nicl.2020.102336 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.neuroimage.2020.117137 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1002/hbm.25365 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.neuroimage.2021.118611 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.clinph.2021.10.008 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.neuroimage.2009.10.003 is INVALID because of 'https://doi.org/' prefix

arfon · 2022-02-23T15:59:49Z

@sebastientourbier, for authors with multiple affiliations, please quote them. e.g.:

  - name: Meritxell Bach Cuadra
    affiliation: "7,1"
    orcid: 0000-0003-2730-4285

sebastientourbier · 2022-02-24T10:54:40Z

@editorialbot generate pdf

editorialbot · 2022-02-24T10:56:25Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

arfon · 2022-02-24T11:01:30Z

@sebastientourbier – also while I'm looking for an editor for your submission, could you please update your BibTeX file? Specifically:

Please limit your BibTex file to only the entries that you're actually citing in your paper.
Where @editorialbot has suggestions, please check if the DOIs are correct and add them to your BibTeX file.

sebastientourbier · 2022-02-24T11:12:48Z

OK. I am going to take care of this very soon.
I will let you know when this is done.

sebastientourbier · 2022-02-24T13:55:36Z

@editorialbot commands

editorialbot · 2022-02-24T13:55:38Z

Hello @sebastientourbier, here are the things you can ask me to do:


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sebastientourbier · 2022-02-24T13:55:53Z

@editorialbot check references

editorialbot · 2022-02-24T13:56:45Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5281/zenodo.3475969 is OK
- 10.1016/j.neuroimage.2009.06.060 is OK
- 10.1101/188706 is OK
- 10.1006/cbmr.1996.0014 is OK
- 10.1016/J.NEUROIMAGE.2011.08.056 is OK
- 10.1038/sdata.2014.49 is OK
- 10.3389/fninf.2014.00090 is OK
- 10.1038/nn.4500 is OK
- 10.3389/fninf.2018.00052 is OK
- 10.1109/TMI.2008.922696 is OK
- 10.3389/fnhum.2015.00458 is OK
- 10.1371/journal.pone.0080713 is OK
- 10.1002/jmri.1076 is OK
- 10.5281/zenodo.3571874 is OK
- 10.1007/s12021-016-9299-4 is OK
- 10.3389/fninf.2019.00001 is OK
- 10.1089/brain.2013.0154 is OK
- 10.1038/s41592-018-0235-4 is OK
- 10.1016/j.neuroimage.2013.08.048 is OK
- 10.1109/GlobalSIP.2013.6736878 is OK
- 10.1038/nn.4502 is OK
- 10.3389/978-2-88945-472-3 is OK
- 10.1785/gssrl.81.3.530 is OK
- 10.3389/fnins.2012.00149 is OK
- 10.3389/fnhum.2013.00042 is OK
- 10.3389/978-2-88945-821-9 is OK
- 10.1007/s10827-018-0702-z is OK
- 10.1007/978-0-8176-8379-5_19 is OK
- 10.1016/j.neuroimage.2011.10.018 is OK
- 10.1016/j.neubiorev.2014.05.009 is OK
- 10.1371/journal.pone.0048121 is OK
- 10.3389/fninf.2011.00003 is OK
- 10.1016/j.tics.2014.11.008 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1101/631952 is OK
- 10.1016/J.NEUROIMAGE.2017.04.015 is OK
- 10.1016/j.neuroimage.2015.04.042 is OK
- 10.1101/188706 is OK
- 10.1038/s41562-016-0021 is OK
- 10.1002/hbm.21333 is OK
- 10.1101/611590 is OK
- 10.1016/j.neuroimage.2006.01.021 is OK
- 10.1016/j.neuroimage.2015.06.018 is OK
- 10.1016/j.neuroimage.2017.12.073 is OK
- 10.1038/sdata.2014.49 is OK
- 10.1016/J.NEUROIMAGE.2012.06.005 is OK
- 10.1016/j.neuroimage.2018.05.064 is OK
- 10.1016/j.neuroimage.2020.116678 is OK
- 10.1016/j.neuroimage.2015.02.065 is OK
- 10.1002/hbm.24468 is OK
- 10.1371/journal.pcbi.1005209 is OK
- 10.1002/nbm.3752 is OK
- 10.1016/j.neuroimage.2018.11.018 is OK
- 10.3389/fninf.2014.00054 is OK
- 10.1007/978-1-4939-5611-1_30 is OK
- 10.1016/j.neulet.2017.10.003 is OK
- 10.1016/j.neuroimage.2013.04.084 is OK
- 10.1162/netn_a_00098 is OK
- 10.1016/j.neuroimage.2011.09.081 is OK
- 10.1146/annurev-biodatasci-072018-021237 is OK
- 10.1038/mp.2017.92 is OK
- 10.1016/j.neuroimage.2016.06.035 is OK
- 10.1016/j.neuroimage.2013.05.109 is OK
- 10.1016/j.nic.2019.03.005 is OK
- 10.1007/s10278-018-0089-4 is OK
- 10.1145/1272996.1273025 is OK
- 10.1016/j.neuroimage.2016.05.047 is OK
- 10.3389/fninf.2012.00009 is OK
- 10.1002/nbm.3785 is OK
- 10.1002/nbm.3734 is OK
- 10.1016/j.ejrad.2015.11.004 is OK
- 10.3389/fninf.2014.00008 is OK
- 10.1162/netn_a_00111 is OK
- 10.1162/netn_e_00052 is OK
- 10.3389/fnins.2017.00656 is OK
- 10.1101/802629 is OK
- 10.1007/s10548-018-0691-2 is OK
- 10.3389/fninf.2017.00017 is OK
- 10.1016/j.neuroimage.2010.01.091 is OK
- 10.1109/TMI.2015.2430850 is OK
- 10.1016/b978-0-12-398398-5.00009-6 is OK
- 10.1186/s13742-015-0072-7 is OK
- 10.1016/j.neuroimage.2012.01.021 is OK
- 10.1007/s11682-018-9994-x is OK
- 10.1007/978-3-642-31208-3_6 is OK
- 10.1016/J.NEUROIMAGE.2011.09.015 is OK
- 10.1109/TMI.2006.880587 is OK
- 10.1073/PNAS.1922248117 is OK
- 10.1073/PNAS.1922248117 is OK
- 10.1016/j.neuroimage.2013.04.087 is OK
- 10.1002/mrm.10268 is OK
- 10.1016/j.clinph.2020.09.018 is OK
- 10.1016/j.neuroimage.2017.10.034 is OK
- 10.1002/nbm.3841 is OK
- 10.1038/sdata.2018.270 is OK
- 10.1002/nbm.1940080707 is OK
- 10.1109/MPUL.2011.2181023 is OK
- 10.1016/j.neuroimage.2016.03.046 is OK
- 10.1038/s41467-018-04614-w is OK
- 10.3389/fninf.2012.00014 is OK
- 10.1016/j.jneumeth.2011.09.031 is OK
- 10.3389/fnins.2013.00267 is OK
- 10.1016/j.neuroimage.2013.04.016 is OK
- 10.1038/nn.4134 is OK
- 10.1016/j.neuroimage.2017.03.055 is OK
- 10.1155/2018/5340717 is OK
- 10.1016/b978-0-12-398398-5.00008-4 is OK
- 10.1016/j.jneumeth.2010.01.014 is OK
- 10.1371/journal.pone.0184661 is OK
- 10.1371/journal.pone.0184661 is OK
- 10.1101/551739 is OK
- 10.1002/ima.22005 is OK
- 10.1017/nws.2013.19 is OK
- 10.1016/j.media.2010.07.001 is OK
- 10.1016/j.media.2010.07.001 is OK
- 10.1038/nbt.3820 is OK
- 10.3389/fninf.2011.00013 is OK
- 10.1016/j.neuroimage.2012.03.072 is OK
- 10.1101/2020.10.15.341495 is OK
- 10.1101/443556 is OK
- 10.3389/fninf.2012.00022 is OK
- 10.1002/eap.1822 is OK
- 10.1371/journal.pcbi.1006064 is OK
- 10.1038/nrn3475 is OK
- 10.1007/978-3-319-46720-7_24 is OK
- 10.1016/j.neuroimage.2008.04.186 is OK
- 10.1002/mrm.20279 is OK
- 10.1101/2020.09.04.282269 is OK
- 10.1016/j.neuroimage.2013.12.012 is OK
- 10.1002/uog.5256 is OK
- 10.3389/fninf.2015.00012 is OK
- 10.1002/hbm.23843 is OK
- 10.3389/fninf.2017.00076 is OK
- 10.1126/science.1213847 is OK
- 10.1016/j.neuroimage.2008.05.002 is OK
- 10.1016/j.neuroimage.2007.02.016 is OK
- 10.5281/ZENODO.3712762 is OK
- 10.1038/nrn.2016.167 is OK
- 10.1093/gigascience/gix013 is OK
- 10.1001/jamainternmed.2017.5763 is OK
- 10.11138/FNeur/2017.32.2.097 is OK
- 10.1016/j.neuroimage.2015.06.092 is OK
- 10.1371/journal.pone.0177459 is OK
- 10.21105/joss.01294 is OK
- 10.1016/j.neuroimage.2013.04.056 is OK
- 10.1002/hbm.22083 is OK
- 10.1016/j.media.2007.06.004 is OK
- 10.3389/fnhum.2015.00059 is OK
- 10.1038/sdata.2016.44 is OK
- 10.1007/s11571-017-9445-1 is OK
- 10.1038/s41467-017-01285-x is OK
- 10.1371/journal.pone.0113838 is OK
- 10.1371/journal.pone.0038234 is OK
- 10.1016/j.neuroimage.2012.02.018 is OK
- 10.1371/journal.pcbi.0010042 is OK
- 10.1073/pnas.1801582115 is OK
- 10.3389/fninf.2014.00044 is OK
- 10.3389/fpls.2011.00034 is OK
- 10.1016/j.neuroimage.2013.04.127 is OK
- 10.1016/j.clinph.2019.09.006 is OK
- 10.1371/journal.pbio.3000066 is OK
- 10.1038/s41597-019-0073-y is OK
- 10.1109/NER.2019.8717114 is OK
- 10.1016/j.neuroimage.2013.03.053 is OK
- 10.1016/j.neuroimage.2013.03.053 is OK
- 10.1038/nn.4550 is OK
- 10.1016/j.neuroimage.2016.11.052 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1016/j.neuroimage.2010.07.024 is OK
- 10.1016/j.media.2013.03.009 is OK
- 10.1016/j.media.2013.03.009 is OK
- 10.1016/j.neuroimage.2018.07.070 is OK
- 10.1016/j.neuroimage.2019.116207 is OK
- 10.1126/scitranslmed.aaf5027 is OK
- 10.1371/journal.pmed.0020124 is OK
- 10.1016/j.nicl.2020.102336 is OK
- 10.1016/j.neuroimage.2020.117137 is OK
- 10.1162/netn_a_00147 is OK
- 10.1002/hbm.25365 is OK
- 10.1016/j.neuroimage.2021.118611 is OK
- 10.1162/netn_a_00218 is OK
- doi10.18112/openneuro.ds003505.v1.0.3 is OK
- doi10.18112/openneuro.ds003505.v1.1.1 is OK
- 10.1038/s41597-021-01116-1 is OK
- 10.1016/j.clinph.2021.10.008 is OK
- 10.1016/j.neuroimage.2009.10.003 is OK
- 10.12688/f1000research.20887.3 is OK
- 10.1101/2022.01.31.478189 is OK
- 10.1162/netn_a_00114 is OK

MISSING DOIs

- 10.1007/978-3-319-61358-1_9 may be a valid DOI for title: Diffusion MRI Anisotropy : Modeling , Analysis and Interpretation
- 10.1126/sciadv.aba8245 may be a valid DOI for title: A new method for accurate in vivo mapping of human brain connections using microstructural and anatomical information
- 10.1101/gr.1239303 may be a valid DOI for title: Cytoscape: a software environment for integrated models of biomolecular interaction networks

INVALID DOIs

- 10.1016/S1053-811928022991132-8 is INVALID
- 10.1002/28SICI291099-14922819990229123A13C513A3AAID-NBM5463E3.0.CO3B2-E is INVALID

sebastientourbier · 2022-02-24T13:56:48Z

@editorialbot check references

editorialbot · 2022-02-24T13:57:14Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5281/zenodo.3475969 is OK
- 10.1016/J.NEUROIMAGE.2011.08.056 is OK
- 10.1038/nn.4500 is OK
- 10.5281/zenodo.3571874 is OK
- 10.3389/fninf.2019.00001 is OK
- 10.1038/s41592-018-0235-4 is OK
- 10.1038/nn.4502 is OK
- 10.1371/journal.pone.0048121 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1016/j.neuroimage.2015.04.042 is OK
- 10.1101/188706 is OK
- 10.1016/j.neuroimage.2006.01.021 is OK
- 10.1016/j.neuroimage.2015.02.065 is OK
- 10.1371/journal.pcbi.1005209 is OK
- 10.1146/annurev-biodatasci-072018-021237 is OK
- 10.3389/fninf.2014.00008 is OK
- 10.1162/netn_e_00052 is OK
- 10.1016/j.neuroimage.2012.01.021 is OK
- 10.1007/978-3-642-31208-3_6 is OK
- 10.1016/J.NEUROIMAGE.2011.09.015 is OK
- 10.1016/j.clinph.2020.09.018 is OK
- 10.1038/sdata.2018.270 is OK
- 10.1016/j.jneumeth.2011.09.031 is OK
- 10.3389/fnins.2013.00267 is OK
- 10.1016/j.neuroimage.2019.116137 is OK
- 10.3389/fninf.2011.00013 is OK
- 10.1038/s41592-021-01185-5 is OK
- 10.5281/ZENODO.3712762 is OK
- 10.1371/journal.pone.0177459 is OK
- 10.21105/joss.01294 is OK
- 10.1038/sdata.2016.44 is OK
- 10.1371/journal.pcbi.0010042 is OK
- 10.1016/j.clinph.2019.09.006 is OK
- 10.1038/nn.4550 is OK
- 10.1016/j.nicl.2020.102336 is OK
- 10.1016/j.neuroimage.2020.117137 is OK
- 10.1162/netn_a_00147 is OK
- 10.1002/hbm.25365 is OK
- 10.1016/j.neuroimage.2021.118611 is OK
- 10.1162/netn_a_00218 is OK
- doi10.18112/openneuro.ds003505.v1.1.1 is OK
- 10.1038/s41597-021-01116-1 is OK
- 10.1016/j.clinph.2021.10.008 is OK
- 10.1016/j.neuroimage.2009.10.003 is OK
- 10.12688/f1000research.20887.3 is OK
- 10.1101/gr.1239303 is OK
- 10.1101/2022.01.31.478189 is OK
- 10.1162/netn_a_00114 is OK

MISSING DOIs

- None

INVALID DOIs

- None

sebastientourbier · 2022-02-24T13:58:04Z

@editorialbot generate pdf

editorialbot · 2022-02-24T13:59:56Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

sebastientourbier · 2022-02-24T14:34:12Z

@editorialbot check references

editorialbot · 2022-02-24T14:34:37Z

Checking the BibTeX entries failed with the following error:

Lexical or syntactical errors: 

@@

sebastientourbier · 2022-02-24T14:36:42Z

@editorialbot check references

editorialbot · 2022-02-24T14:37:10Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.5281/zenodo.3475969 is OK
- 10.1016/J.NEUROIMAGE.2011.08.056 is OK
- 10.1038/nn.4500 is OK
- 10.5281/zenodo.3571874 is OK
- 10.3389/fninf.2019.00001 is OK
- 10.1038/s41592-018-0235-4 is OK
- 10.1038/nn.4502 is OK
- 10.1371/journal.pone.0048121 is OK
- 10.3389/conf.fninf.2013.09.00042 is OK
- 10.1016/j.neuroimage.2015.04.042 is OK
- 10.1101/188706 is OK
- 10.1016/j.neuroimage.2006.01.021 is OK
- 10.1016/j.neuroimage.2015.02.065 is OK
- 10.1371/journal.pcbi.1005209 is OK
- 10.1146/annurev-biodatasci-072018-021237 is OK
- 10.3389/fninf.2014.00008 is OK
- 10.1162/netn_e_00052 is OK
- 10.1016/j.neuroimage.2012.01.021 is OK
- 10.1007/978-3-642-31208-3_6 is OK
- 10.1016/J.NEUROIMAGE.2011.09.015 is OK
- 10.1016/j.clinph.2020.09.018 is OK
- 10.1038/sdata.2018.270 is OK
- 10.1016/j.jneumeth.2011.09.031 is OK
- 10.3389/fnins.2013.00267 is OK
- 10.1016/j.neuroimage.2019.116137 is OK
- 10.3389/fninf.2011.00013 is OK
- 10.1038/s41592-021-01185-5 is OK
- 10.5281/ZENODO.3712762 is OK
- 10.1371/journal.pone.0177459 is OK
- 10.21105/joss.01294 is OK
- 10.1038/sdata.2016.44 is OK
- 10.1371/journal.pcbi.0010042 is OK
- 10.1016/j.clinph.2019.09.006 is OK
- 10.1038/nn.4550 is OK
- 10.1016/j.nicl.2020.102336 is OK
- 10.1016/j.neuroimage.2020.117137 is OK
- 10.1162/netn_a_00147 is OK
- 10.1002/hbm.25365 is OK
- 10.1016/j.neuroimage.2021.118611 is OK
- 10.1162/netn_a_00218 is OK
- doi10.18112/openneuro.ds003505.v1.1.1 is OK
- 10.1038/s41597-021-01116-1 is OK
- 10.1016/j.clinph.2021.10.008 is OK
- 10.1016/j.neuroimage.2009.10.003 is OK
- 10.12688/f1000research.20887.3 is OK
- 10.1101/gr.1239303 is OK
- 10.1101/2022.01.31.478189 is OK
- 10.1162/netn_a_00114 is OK
- 10.1073/PNAS.1922248117 is OK
- 10.1016/j.media.2007.06.004 is OK

MISSING DOIs

- None

INVALID DOIs

- None

sebastientourbier · 2022-02-24T14:37:48Z

@editorialbot generate pdf

editorialbot · 2022-02-24T14:40:00Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

sebastientourbier · 2022-02-24T14:53:08Z

@editorialbot generate pdf

editorialbot · 2022-02-24T14:55:34Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

sebastientourbier · 2022-02-24T14:59:24Z

@arfon I reviewed my BibTex file and only kept the entries that are used in the paper. I also took care of adding a few missing DOI and correcting a few problematic ones. Now it seems everything is fine with check references and by checking the generated PDF.

arfon · 2022-02-27T18:14:20Z

Thanks @sebastientourbier. We're currently managing a large backlog of submissions and the editors most appropriate for your area are already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

Kevin-Mattheus-Moerman · 2022-03-07T09:27:34Z

@osorensen is this something you think you could help edit? It is waitlisted at the moment but seems related to your field too.

osorensen · 2022-03-07T09:41:59Z

@editorialbot assign @osorensen as editor

editorialbot · 2022-03-07T09:42:01Z

Assigned! @osorensen is now the editor

osorensen · 2022-03-09T07:13:34Z

👋 @jwirsich @adbartni @jameschapman19 would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

jwirsich · 2022-03-10T14:05:47Z

@osorensen Thanks fo the invite but I'm coauthor on the paper ;)

adbartni · 2022-03-10T19:36:19Z

@osorensen Thanks for reaching out, I'd be glad to review!

osorensen · 2022-03-11T06:37:45Z

@osorensen Thanks fo the invite but I'm coauthor on the paper ;)

Oooops.. Sorry!

osorensen · 2022-03-11T06:38:54Z

@editorialbot add @adbartni as reviewer

editorialbot · 2022-03-11T06:38:56Z

@adbartni added to the reviewers list!

osorensen · 2022-03-13T14:20:11Z

@szorowi1 @jsheunis would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

jsheunis · 2022-03-14T21:07:07Z

@osorensen I'd be happy to help. One question, what's the expected timeline for finishing a review? I just started working again after parental leave, so I have a backlog of tasks to get done first.

osorensen · 2022-03-15T06:49:48Z

Thanks @jsheunis. There's no strict timeline, but if you can complete the first round of review within a month it would be great. Does that sound ok?

jsheunis · 2022-03-15T08:04:51Z

That will work 👍

osorensen · 2022-03-15T08:42:06Z

@editorialbot add @jsheunis as reviewer

editorialbot · 2022-03-15T08:42:07Z

@jsheunis added to the reviewers list!

osorensen · 2022-03-17T07:03:16Z

@editorialbot start review

editorialbot · 2022-03-17T07:03:18Z

OK, I've started the review over in #4248.

editorialbot added the pre-review label Feb 23, 2022

editorialbot added Python Shell Dockerfile labels Feb 23, 2022

arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Feb 27, 2022

editorialbot assigned osorensen Mar 7, 2022

osorensen removed the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Mar 9, 2022

editorialbot assigned adbartni Mar 11, 2022

editorialbot assigned jsheunis Mar 15, 2022

editorialbot closed this as completed Mar 17, 2022

[PRE REVIEW]: Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping #4194

[PRE REVIEW]: Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping #4194

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