[PRE REVIEW]: fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability #3333

whedon · 2021-06-05T06:20:43Z

Submitting author: @Shyentist (Pasquale Buonomo)
Repository: https://github.com/Shyentist/fish-r-man
Version: v1.0.0
Editor: @KristinaRiemer
Reviewers: @jules32, @HeatherWelch
Managing EiC: Kevin M. Moerman

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/9895e0e14fbd2be0622022dbbe15fe10"><img src="https://joss.theoj.org/papers/9895e0e14fbd2be0622022dbbe15fe10/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/9895e0e14fbd2be0622022dbbe15fe10/status.svg)](https://joss.theoj.org/papers/9895e0e14fbd2be0622022dbbe15fe10)

Author instructions

Thanks for submitting your paper to JOSS @Shyentist. Currently, there isn't an JOSS editor assigned to your paper.

@Shyentist if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

The text was updated successfully, but these errors were encountered:

whedon · 2021-06-05T06:20:46Z

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

whedon · 2021-06-05T06:20:58Z

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.07 s (487.1 files/s, 61518.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JSON                            19             27              0           1923
R                               11            265             63           1758
CSS                              1             85              0            147
Markdown                         4             37              0            115
-------------------------------------------------------------------------------
SUM:                            35            414             63           3943
-------------------------------------------------------------------------------


Statistical information for the repository '4927541a908dcf250f369f54' was
gathered on 2021/06/05.
No commited files with the specified extensions were found.

whedon · 2021-06-05T06:20:59Z

PDF failed to compile for issue #3333 with the following error:

 Can't find any papers to compile :-(

Shyentist · 2021-06-05T06:57:42Z

@whedon generate pdf

whedon · 2021-06-05T06:57:52Z

PDF failed to compile for issue #3333 with the following error:

 /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon.rb:147:in `check_fields': Paper YAML header is missing expected fields: affiliations (RuntimeError)
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon.rb:89:in `initialize'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon/processor.rb:38:in `new'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon/processor.rb:38:in `set_paper'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/bin/whedon:58:in `prepare'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/bin/whedon:131:in `<top (required)>'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'

Kevin-Mattheus-Moerman · 2021-06-05T07:07:33Z

@Shyentist it looks like the YAML content at the top of the paper is not as expected/standard. In particular the affiliation field is missing. Can you add it? I believe you can also leave it empty.

Shyentist · 2021-06-05T07:14:39Z

@Kevin-Mattheus-Moerman thank you, I added "Independent researcher" as affiliation. Would that be okay?

Kevin-Mattheus-Moerman · 2021-06-05T07:14:56Z

@whedon generate pdf

whedon · 2021-06-05T07:15:08Z

PDF failed to compile for issue #3333 with the following error:

 /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse': (9a92dbd0b52e56f728be8eb9/paper/paper.md): found a tab character that violate intendation while scanning a plain scalar at line 14 column 12 (Psych::SyntaxError)
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse_stream'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:390:in `parse'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:277:in `load'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:578:in `block in load_file'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `open'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `load_file'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon.rb:127:in `load_yaml'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon.rb:87:in `initialize'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon/processor.rb:38:in `new'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon/processor.rb:38:in `set_paper'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/bin/whedon:58:in `prepare'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/base.rb:466:in `start'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/bin/whedon:131:in `<top (required)>'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'

Kevin-Mattheus-Moerman · 2021-06-05T07:16:34Z

@marcosvital this looks like something you could handle. However, you appear to be at capacity in terms of the number of papers you are already handling. I will label this submission as waitlisted until you, or another suitable editor, becomes available.

Shyentist · 2021-06-05T07:17:15Z

@whedon generate pdf

whedon · 2021-06-05T07:17:39Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

danielskatz · 2021-06-16T20:26:17Z

👋 @KristinaRiemer - Would you be willing to edit this submission?

danielskatz · 2021-06-16T20:26:27Z

@whedon invite @KristinaRiemer as editor

whedon · 2021-06-16T20:26:31Z

@KristinaRiemer has been invited to edit this submission.

KristinaRiemer · 2021-06-21T15:46:00Z

I can edit this submission.

KristinaRiemer · 2021-06-21T15:46:46Z

@whedon assign me as editor

whedon · 2021-06-21T15:46:50Z

OK, the editor is @KristinaRiemer

KristinaRiemer · 2021-06-28T15:55:23Z

@saskiaotto @jules32 @HeatherWelch would you be able and willing to be a reviewer for this JOSS software submission?

If you're not familiar with JOSS, these reviews happen openly on GitHub and are guided by this checklist. There's some more information on this process here. There's a link to the GitHub repo for the submission in the first comment on this issue.

jules32 · 2021-07-06T16:34:31Z

Hi @KristinaRiemer – yes I would be able to review by the end of the month, would that timeline work for you?

KristinaRiemer · 2021-07-07T13:35:15Z

Hi @jules32, that would be great, thank you so much! I'll assign you a reviewer, the review won't start until I have found a second reviewer.

@saskiaotto @HeatherWelch would either of you be able to review this submission? Let me know if that's possible!

KristinaRiemer · 2021-07-07T13:35:58Z

@whedon assign @jules32 as reviewer

whedon · 2021-07-07T13:36:02Z

OK, @jules32 is now a reviewer

HeatherWelch · 2021-07-09T15:48:17Z

Hi @KristinaRiemer <https://github.com/KristinaRiemer> – I can also review by the end of the month. Best, Heather

…

On Wed, Jul 7, 2021 at 6:36 AM whedon ***@***.***> wrote: OK, @jules32 <https://github.com/jules32> is now a reviewer — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#3333 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AFTRCYA5KM64GV6XZV6NDJDTWRJ43ANCNFSM46EERG4A> .

-- *Heather Welch* Project Scientist UCSC and NOAA SWFSC Environmental Research Division 99 Pacific St. Suite 255A Monterey, CA *93940* phone (wk): 831-648-8516 <http://conservationplanning.org/people/heather-welch/> http://conservationplanning.org/people/heather-welch/ https://github.com/HeatherWelch

KristinaRiemer · 2021-07-09T20:39:41Z

@whedon add @HeatherWelch as reviewer

whedon · 2021-07-09T20:39:45Z

OK, @HeatherWelch is now a reviewer

KristinaRiemer · 2021-07-09T20:40:07Z

@whedon start review

whedon · 2021-07-09T20:40:11Z

OK, I've started the review over in #3467.

KristinaRiemer · 2021-07-09T20:41:46Z

Great, thanks so much @HeatherWelch!

@jules32 and @HeatherWelch, the review will take place in the GitHub issue linked in the previous comment. There is a checklist to help guide your review over there. You can provide comments to the submission author by creating new issues in the software repository, or by posting overall comments in the review issue. Also free free to let me know how I can help!

whedon added the pre-review label Jun 5, 2021

whedon added CSS R labels Jun 5, 2021

Kevin-Mattheus-Moerman added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Jun 5, 2021

whedon assigned KristinaRiemer Jun 21, 2021

whedon assigned jules32 and KristinaRiemer and unassigned KristinaRiemer Jul 7, 2021

whedon unassigned jules32 and KristinaRiemer Jul 9, 2021

whedon assigned HeatherWelch, jules32 and KristinaRiemer Jul 9, 2021

whedon closed this as completed Jul 9, 2021

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

[PRE REVIEW]: fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability #3333

[PRE REVIEW]: fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability #3333

whedon commented Jun 5, 2021 •

edited

Loading

whedon commented Jun 5, 2021

whedon commented Jun 5, 2021

whedon commented Jun 5, 2021

Shyentist commented Jun 5, 2021

whedon commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

Shyentist commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

whedon commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

Shyentist commented Jun 5, 2021

whedon commented Jun 5, 2021

danielskatz commented Jun 16, 2021

danielskatz commented Jun 16, 2021

whedon commented Jun 16, 2021

KristinaRiemer commented Jun 21, 2021

KristinaRiemer commented Jun 21, 2021

whedon commented Jun 21, 2021

KristinaRiemer commented Jun 28, 2021

jules32 commented Jul 6, 2021

KristinaRiemer commented Jul 7, 2021

KristinaRiemer commented Jul 7, 2021

whedon commented Jul 7, 2021

HeatherWelch commented Jul 9, 2021 via email

KristinaRiemer commented Jul 9, 2021

whedon commented Jul 9, 2021

KristinaRiemer commented Jul 9, 2021

whedon commented Jul 9, 2021

KristinaRiemer commented Jul 9, 2021

[PRE REVIEW]: fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability #3333

[PRE REVIEW]: fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability #3333

Comments

whedon commented Jun 5, 2021 • edited Loading

Status

whedon commented Jun 5, 2021

whedon commented Jun 5, 2021

whedon commented Jun 5, 2021

Shyentist commented Jun 5, 2021

whedon commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

Shyentist commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

whedon commented Jun 5, 2021

Kevin-Mattheus-Moerman commented Jun 5, 2021

Shyentist commented Jun 5, 2021

whedon commented Jun 5, 2021

danielskatz commented Jun 16, 2021

danielskatz commented Jun 16, 2021

whedon commented Jun 16, 2021

KristinaRiemer commented Jun 21, 2021

KristinaRiemer commented Jun 21, 2021

whedon commented Jun 21, 2021

KristinaRiemer commented Jun 28, 2021

jules32 commented Jul 6, 2021

KristinaRiemer commented Jul 7, 2021

KristinaRiemer commented Jul 7, 2021

whedon commented Jul 7, 2021

HeatherWelch commented Jul 9, 2021 via email

KristinaRiemer commented Jul 9, 2021

whedon commented Jul 9, 2021

KristinaRiemer commented Jul 9, 2021

whedon commented Jul 9, 2021

KristinaRiemer commented Jul 9, 2021

whedon commented Jun 5, 2021 •

edited

Loading