[PRE REVIEW]: FielDHub: An R Shiny Package for Design of Experiments in Life Sciences

[whedon]

Submitting author: @DidierMurilloF (Didier Murillo Florez)
Repository: https://github.com/DidierMurilloF/FielDHub
Version: 0.1.0
Editor: @csoneson
Reviewers: @Prof-ThiagoOliveira, @dlebauer
Managing EiC: Arfon Smith

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Author instructions

Thanks for submitting your paper to JOSS @DidierMurilloF. Currently, there isn't an JOSS editor assigned to your paper.

@DidierMurilloF if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

Failed to discover a Statement of need section in paper

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.31 s (423.4 files/s, 88849.8 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            30           1365            357          10651
R                               81           1779           1824           9880
CSS                              5            148             70            642
JavaScript                       3             64             32            256
Markdown                         5             71              0            181
TeX                              1              5              0             52
YAML                             4              4              3             43
SVG                              1              0              1             11
Rmd                              1             12             31              6
-------------------------------------------------------------------------------
SUM:                           131           3448           2318          21722
-------------------------------------------------------------------------------


Statistical information for the repository '94bad9ed849a59e518e6d04d' was
gathered on 2021/03/14.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
DidierMurillo                    1           352              0          100.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
DidierMurillo               352          100.0          0.0                9.09

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1198/108571106X154443 is OK

MISSING DOIs

- None

INVALID DOIs

- https://doi.org/10.1111/j.1467-842X.2011.00642.x is INVALID because of 'https://doi.org/' prefix

[whedon]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[arfon]

@whedon invite @csoneson as editor

👋 @csoneson - would you be able to edit this submission for JOSS?

[whedon]

@csoneson has been invited to edit this submission.

[csoneson]

@whedon assign @csoneson as editor

[whedon]

OK, the editor is @csoneson

[csoneson]

👋 @DidierMurilloF - thanks for submitting to JOSS. I will handle your submission, and start by finding a couple of suitable reviewers. If you have any suggestions (e.g., from the list linked in the first post above), please mention them here (without tagging them with @).

I noticed that your paper is currently missing a 'Statement of Need' section (see here). Could you please add that (I think you can break out a part of the 'Summary' section)? Also, please fix the invalid DOI mentioned by Whedon above (remove the https://doi.org/ prefix). Thanks!

[DidierMurilloF]

@csoneson<https://github.com/csoneson> thank you for accepting to be the editor. I added the 'Statement of Need' section and fixed the problem with DOI. From the list of reviewers and I would like to suggest to ThiagoOliveira and dlebauer. Thank you for your time and consideration! Best regards, Didier Murillo.

…

________________________________ From: Charlotte Soneson ***@***.***> Sent: Tuesday, March 16, 2021 2:51 AM To: openjournals/joss-reviews ***@***.***> Cc: Murillo Florez, Didier ***@***.***>; Mention ***@***.***> Subject: Re: [openjournals/joss-reviews] [PRE REVIEW]: FielDHub: An R Shiny Package for Design of Experiments in Life Sciences (#3107) 👋 @DidierMurilloF<https://github.com/DidierMurilloF> - thanks for submitting to JOSS. I will handle your submission, and start by finding a couple of suitable reviewers. If you have any suggestions (e.g., from the list linked in the first post above), please mention them here (without tagging them with @). I noticed that your paper is currently missing a 'Statement of Need' section (see here<https://joss.readthedocs.io/en/latest/submitting.html#what-should-my-paper-contain>). Could you please add that (I think you can break out a part of the 'Summary' section)? Also, please fix the invalid DOI mentioned by Whedon above (remove the https://doi.org/ prefix). Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#3107 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AS6IDLSUSQHWONULTSIB4LDTD4EXNANCNFSM4ZFKBCSA>.

[csoneson]

@whedon generate pdf

[whedon]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[csoneson]

@whedon check references

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1111/j.1467-842X.2011.00642.x is OK
- 10.1198/108571106X154443 is OK

MISSING DOIs

- None

INVALID DOIs

- None

[csoneson]

👋 @Prof-ThiagoOliveira, @dlebauer - would you be interested in reviewing this submission for JOSS?

FielDHub: An R Shiny Package for Design of Experiments in Life Sciences

[Prof-ThiagoOliveira]

Dear Madam/Sir, Yes, I would appreciate to review this paper. Best regards, Dr. Thiago de Paula Oliveira Blog: https://prof-thiagooliveira.netlify.com/ ​ Researcher in Statistics The Roslin Institute University of Edinburgh

…

________________________________ From: Charlotte Soneson ***@***.***> Sent: 17 March 2021 07:53 To: openjournals/joss-reviews ***@***.***> Cc: DE PAULA OLIVEIRA Thiago ***@***.***>; Mention ***@***.***> Subject: Re: [openjournals/joss-reviews] [PRE REVIEW]: FielDHub: An R Shiny Package for Design of Experiments in Life Sciences (#3107) This email was sent to you by someone outside the University. You should only click on links or attachments if you are certain that the email is genuine and the content is safe. 👋 @Prof-ThiagoOliveira<https://github.com/Prof-ThiagoOliveira>, @dlebauer<https://github.com/dlebauer> - would you be interested in reviewing this submission for JOSS? FielDHub: An R Shiny Package for Design of Experiments in Life Sciences — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#3107 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AIGNHDOVT7X5SZ3ZSAF4ZITTEBNWJANCNFSM4ZFKBCSA>. The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. Is e buidheann carthannais a th’ ann an Oilthigh Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336.

[csoneson]

@Prof-ThiagoOliveira - great, thanks! Once we have secured one more reviewer I will start the actual review issue (where you will find the checklist to fill etc).

[dlebauer]

Hi Charlotte - yes I am interested in reviewing this submission

…

On Wed, Mar 17, 2021 at 4:55 AM Charlotte Soneson ***@***.***> wrote: *External Email* @Prof-ThiagoOliveira <https://github.com/Prof-ThiagoOliveira> - great, thanks! Once we have secured one more reviewer I will start the actual review issue (where you will find the checklist to fill etc). — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#3107 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AADRPZ3GOO5JHGP7SYVZOETTECKDDANCNFSM4ZFKBCSA> .

[csoneson]

Brilliant, thanks both for your quick replies! I will now open the review issue and further communication will happen over there.

[csoneson]

@whedon assign @Prof-ThiagoOliveira as reviewer

[whedon]

OK, @Prof-ThiagoOliveira is now a reviewer

[csoneson]

@whedon add @dlebauer as reviewer

[whedon]

OK, @dlebauer is now a reviewer

[csoneson]

@whedon start review

[whedon]

OK, I've started the review over in #3122.