Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Creating pull request for 10.21105.joss.03249 #2287

Closed
wants to merge 2 commits into from
Closed

Creating pull request for 10.21105.joss.03249 #2287

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
a0568c0
Creating 10.21105.joss.03249.pdf
whedon May 8, 2021
1f0c7ee
Creating 10.21105.joss.03249.crossref.xml
whedon May 8, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
148 changes: 148 additions & 0 deletions joss.03249/10.21105.joss.03249.crossref.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,148 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/4.4.0" xmlns:ai="http://www.crossref.org/AccessIndicators.xsd" xmlns:rel="http://www.crossref.org/relations.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="4.4.0" xsi:schemaLocation="http://www.crossref.org/schema/4.4.0 http://www.crossref.org/schemas/crossref4.4.0.xsd">
<head>
<doi_batch_id>5c3d2044e88a555cbe0053b9d405c6ce</doi_batch_id>
<timestamp>20210508073858</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>05</month>
<year>2021</year>
</publication_date>
<journal_volume>
<volume>6</volume>
</journal_volume>
<issue>61</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases.</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Nhat</given_name>
<surname>Tran</surname>
<ORCID>http://orcid.org/0000-0002-2575-9633</ORCID>
</person_name>
<person_name sequence="additional" contributor_role="author">
<given_name>Jean</given_name>
<surname>Gao</surname>
</person_name>
</contributors>
<publication_date>
<month>05</month>
<day>08</day>
<year>2021</year>
</publication_date>
<pages>
<first_page>3249</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">10.21105/joss.03249</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">“https://doi.org/10.5281/zenodo.4731011”</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/3249</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>10.21105/joss.03249</doi>
<resource>https://joss.theoj.org/papers/10.21105/joss.03249</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.03249.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="ref1">
<unstructured_citation>Comprehensive molecular profiling of lung adenocarcinoma, Network, Cancer Genome Atlas Research and others, Nature, 511, 7511, 543–550, 2014, Nature Publishing Group</unstructured_citation>
</citation>
<citation key="ref2">
<doi>10.1186/s13059-017-1382-0</doi>
</citation>
<citation key="ref3">
<doi>10.3389/fonc.2020.00804</doi>
</citation>
<citation key="ref4">
<unstructured_citation>Integrative single-cell analysis, Stuart, Tim and Satija, Rahul, Nature Reviews Genetics, 20, 5, 257–272, 2019, Nature Publishing Group</unstructured_citation>
</citation>
<citation key="ref5">
<doi>10.1093/bioinformatics/btz133</doi>
</citation>
<citation key="ref6">
<unstructured_citation>Transcriptome and genome sequencing uncovers functional variation in humans, Lappalainen, Tuuli and Sammeth, Michael and Friedländer, Marc R and Ac‘t Hoen, Peter and Monlong, Jean and Rivas, Manuel A and Gonzalez-Porta, Mar and Kurbatova, Natalja and Griebel, Thasso and Ferreira, Pedro G and others, Nature, 501, 7468, 506–511, 2013, Nature Publishing Group</unstructured_citation>
</citation>
<citation key="ref7">
<unstructured_citation>Proteogenomic characterization of human colon and rectal cancer, Zhang, Bing and Wang, Jing and Wang, Xiaojing and Zhu, Jing and Liu, Qi and Shi, Zhiao and Chambers, Matthew C and Zimmerman, Lisa J and Shaddox, Kent F and Kim, Sangtae and others, Nature, 513, 7518, 382–387, 2014, Nature Publishing Group</unstructured_citation>
</citation>
<citation key="ref8">
<doi>10.1074/mcp.M115.052381</doi>
</citation>
<citation key="ref9">
<doi>10.1371/journal.pcbi.1005752</doi>
</citation>
<citation key="ref10">
<doi>10.1038/nbt.3134</doi>
</citation>
<citation key="ref11">
<doi>10.1093/bib/bbx080</doi>
</citation>
<citation key="ref12">
<unstructured_citation>RNAcentral: a comprehensive database of non-coding RNA sequences, Consortium, RNAcentral, Nucleic acids research, gkw1008, 2016, Oxford University Press</unstructured_citation>
</citation>
<citation key="ref13">
<doi>10.1101/gr.132159.111</doi>
</citation>
<citation key="ref14">
<unstructured_citation>HMDD v3. 0: a database for experimentally supported human microRNA–disease associations, Huang, Zhou and Shi, Jiangcheng and Gao, Yuanxu and Cui, Chunmei and Zhang, Shan and Li, Jianwei and Zhou, Yuan and Cui, Qinghua, Nucleic acids research, 2018</unstructured_citation>
</citation>
<citation key="ref15">
<doi>10.1093/nar/gkw943</doi>
</citation>
<citation key="ref16">
<doi>10.1093/nar/gks1099</doi>
</citation>
<citation key="ref17">
<doi>10.1093/nar/gkt1057</doi>
</citation>
<citation key="ref18">
<unstructured_citation>miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database, Chou, Chih-Hung and Chang, Nai-Wen and Shrestha, Sirjana and Hsu, Sheng-Da and Lin, Yu-Ling and Lee, Wei-Hsiang and Yang, Chi-Dung and Hong, Hsiao-Chin and Wei, Ting-Yen and Tu, Siang-Jyun and others, Nucleic acids research, 44, D1, D239–D247, 2015, Oxford University Press</unstructured_citation>
</citation>
<citation key="ref19">
<unstructured_citation>miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions, Chou, Chih-Hung and Shrestha, Sirjana and Yang, Chi-Dung and Chang, Nai-Wen and Lin, Yu-Ling and Liao, Kuang-Wen and Huang, Wei-Chi and Sun, Ting-Hsuan and Tu, Siang-Jyun and Lee, Wei-Hsiang and others, Nucleic acids research, 46, D1, D296–D302, 2017, Oxford University Press</unstructured_citation>
</citation>
<citation key="ref20">
<doi>10.1093/nar/gky1079</doi>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Binary file added joss.03249/10.21105.joss.03249.pdf
View file
Open in desktop
Binary file not shown.