chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#94

[edx-requirements-bot]

List of packages in the PR without any issue.

• astroid changes from 3.2.2 to 3.2.4
• build changes from 1.2.1 to 1.2.2
• cachetools changes from 5.3.3 to 5.5.0
• coverage changes from 7.5.4 to 7.6.1
• filelock changes from 3.15.4 to 3.16.0
• nltk changes from 3.8.1 to 3.9.1
• platformdirs changes from 4.2.2 to 4.3.2
• pycodestyle changes from 2.12.0 to 2.12.1
• pylint changes from 3.2.3 to 3.2.7
• pyparsing changes from 3.1.2 to 3.1.4
• regex changes from 2024.5.15 to 2024.7.24
• scipy changes from 1.10.1 to 1.14.1
• tomlkit changes from 0.12.5 to 0.13.2
• tox changes from 4.15.1 to 4.18.1
• tqdm changes from 4.66.4 to 4.66.5
• virtualenv changes from 20.26.3 to 20.26.4
• wheel changes from 0.43.0 to 0.44.0

[edx-requirements-bot]

These Packages need manual review..

• [REMOVED] importlib-metadata (6.11.0) removed from the requirements
• [MAJOR] numpy changes from 1.24.4 to 2.1.1
• [REMOVED] tomli (2.0.1) removed from the requirements
• [REMOVED] typing-extensions (4.12.2) removed from the requirements
• [REMOVED] zipp (3.19.2) removed from the requirements

[edx-requirements-bot]

Closing obsolete PR.