Fixes git export to support repositories with dots in their name and cleans export repo #5115
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First commit:
Currently the export to git will cut off the "extension" of the repository name and export the courseware to the wrong directory. This corrects this behavior and adds a regression test to validate the fix.
Second commit:
If something is deleted in the remote repo for a course and it is exported from Studio the deleted items get added back in. This corrects that behavior to clean the repo before exporting the course.