Updated Ramose to 1.0.5 - corrected bugs, dependency problems, added tests

.github/workflows/python-package.yml

@@ -0,0 +1,34 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Python package
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.7", "3.8", "3.9","3.10"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install poetry
+        poetry install
+    - name: Test with pytest
+      run: |
+        poetry run python -u -m unittest discover

.gitignore

@@ -1,2 +1,9 @@
 ramose.log*
-__pycache__/
+__pycache__/
+test/Scripts/
+test/Include/
+test/Lib/
+test/__pycache__
+Include/
+Scripts/
+Lib/

README.md

@@ -1,3 +1,5 @@
+[![Python package](https://github.com/dbrembilla/ramose/actions/workflows/python-package.yml/badge.svg)](https://github.com/dbrembilla/ramose/actions/workflows/python-package.yml)
+[![Coverage](./test/coverage/coverage.svg)](https://github.com/dbrembilla/ramose/actions/workflows/python-package.yml)
 # Restful API Manager Over SPARQL Endpoints (RAMOSE)
 
 Restful API Manager Over SPARQL Endpoints (RAMOSE) is an application that allows agile development and publication of documented RESTful APIs for querying SPARQL endpoints, according to a particular specification document.

__init__.py

@@ -0,0 +1 @@
+__version__ = '0.1.0'

pyproject.toml

@@ -0,0 +1,32 @@
+[tool.poetry]
+name = "ramose"
+version = "1.0.5"
+description = "Restful API Manager Over SPARQL Endpoints (RAMOSE) is an application that allows agile development and publication of documented RESTful APIs for querying SPARQL endpoints, according to a particular specification document."
+authors = ["essepuntato <[email protected]>"]
+license = "ISC"
+repository = "https://github.com/opencitations/ramose/"
+
+[tool.poetry.dependencies]
+python="^3.7"
+certifi="2019.11.28"
+chardet="3.0.4"
+Click="7.0"
+Flask="1.1.1"
+idna="2.8"
+isodate="0.6.1"
+itsdangerous="1.1.0"
+Jinja2="2.11.3"
+Markdown="3.1.1"
+MarkupSafe="1.1.1"
+python-dateutil="2.8.1"
+requests="^2.22.0"
+six="1.13.0"
+urllib3="1.26.5"
+Werkzeug="0.16.0"
+rdflib= "6.1.1"
+
+[tool.poetry.dev-dependencies]
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"

pyvenv.cfg

@@ -0,0 +1,3 @@
+home = C:\Users\david\AppData\Local\Programs\Python\Python39
+include-system-site-packages = false
+version = 3.9.9

ramose.py

@@ -12,7 +12,7 @@
 # REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
 # FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT,
 # OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE,
-# DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS
+# DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER 
 # ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS
 # SOFTWARE.
 
@@ -36,8 +36,11 @@
 from argparse import ArgumentParser
 from os.path import abspath, dirname, basename
 from os import path as pt
+import logging
 from os import sep, getcwd
-
+import logging
+from flask import Flask, request , make_response, send_from_directory
+from werkzeug.exceptions import HTTPException
 
 FIELD_TYPE_RE = "([^\(\s]+)\(([^\)]+)\)"
 PARAM_NAME = "{([^{}\(\)]+)}"
@@ -61,7 +64,7 @@ def read(self, file_path):
         Hash Format, and returns its representation as list of dictionaries."""
         result = []
 
-        with open(file_path, "r", newline=None) as f:
+        with open(file_path, "r", newline=None, encoding = 'utf8') as f:
             first_field_name = None
             cur_object = None
             cur_field_name = None
@@ -592,7 +595,7 @@ def __css(self):
           padding: 0.2em 0.5em;
           border-top: solid 1px #F8F8F8;
           }
-        }
+
 
         .date_log , .method_log {
           color: grey;
@@ -751,8 +754,8 @@ def get_index(self, css_path=None):
 
     def store_documentation(self, file_path, css_path=None):
         """This method stores the HTML documentation of an API in a file."""
-        html = self.get_documentation(css_path)
-        with open(file_path, "w") as f:
+        html = self.get_documentation(css_path)[1]
+        with open(file_path, "w+", encoding='utf8') as f:
             f.write(html)
 
     def clean_log(self, l, api_url):
@@ -1248,21 +1251,27 @@ def type_fields(self, res, op_item):
         header = res[0]
         for heading in header:
             cast_func[heading] = DataType.str
+
 
         if "field_type" in op_item:
             for f, p in findall(FIELD_TYPE_RE, op_item["field_type"]):
                 cast_func[p] = self.dt.get_func(f)
-
+        first = True
         for row in res[1:]:
             new_row = []
             for idx in range(len(header)):
+
                 heading = header[idx]
                 cur_value = row[idx]
                 if type(cur_value) is tuple:
                     cur_value = cur_value[1]
+                if heading == 'timespan' and first:
+                    first = False
                 new_row.append((cast_func[heading](cur_value), cur_value))
-            result.append(new_row)
 
+
+            result.append(new_row)
+
         return [header] + result
 
     def remove_types(self, res):
@@ -1457,7 +1466,7 @@ def nor_api_url(i, b=""):
     def best_match(self, u):
         """This method takes an URL of an API call in input and find the API operation URL and the related
         configuration that best match with the API call, if any."""
-        #u = u.decode('UTF8') if isinstance(u, (bytes, bytearray)) else u
+        u = u.decode('UTF8') if isinstance(u, (bytes, bytearray)) else u
         cur_u = sub("\?.*$", "", u)
         result = None, None
         for base_url in self.all_conf:
@@ -1493,7 +1502,7 @@ def get_op(self, op_complete_url):
     # END: Processing methods
 
 
-if __name__ == "__main__":
+if __name__ == "__main__": # pragma: no cover
     arg_parser = ArgumentParser("ramose.py", description="The 'Restful API Manager Over SPARQL Endpoints' (a.k.a. "
                                                          "'RAMOSE') is an application that allows one to expose a "
                                                          "Restful API interface, according to a particular "
@@ -1525,9 +1534,7 @@ def get_op(self, op_complete_url):
 
     if args.webserver:
         try:
-            import logging
-            from flask import Flask, request , make_response, send_from_directory
-            from werkzeug.exceptions import HTTPException
+
 
             # logs
             dh.logger_ramose()
@@ -1616,5 +1623,5 @@ def doc(api_url):
         if args.output is None:
             print("# Response HTTP code: %s\n# Body:\n%s\n# Content-type: %s" % res)
         else:
-            with open(args.output, "w") as f:
+            with open(args.output, "w", encoding='utf8') as f:
                 f.write(res[1])

requirements.txt

@@ -3,13 +3,14 @@ chardet==3.0.4
 Click==7.0
 Flask==1.1.1
 idna==2.8
-isodate==0.6.0
+isodate==0.6.1
 itsdangerous==1.1.0
 Jinja2==2.11.3
 Markdown==3.1.1
 MarkupSafe==1.1.1
 python-dateutil==2.8.1
-requests==2.22.0
+requests>=2.22.0, <3.0.0
 six==1.13.0
 urllib3==1.26.5
 Werkzeug==0.16.0
+rdflib==6.1.1

test/pyvenv.cfg

@@ -0,0 +1,3 @@
+home = C:\Users\david\AppData\Local\Programs\Python\Python39
+include-system-site-packages = false
+version = 3.9.9