Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

TASK-6765 - Improve VCF Export performance from secondary sample index #2503

Open
wants to merge 22 commits into
base: develop
Choose a base branch
from
Open

TASK-6765 - Improve VCF Export performance from secondary sample index #2503

wants to merge 22 commits into from

Commits on Sep 11, 2024

  1. storage: Add DataFields for INDELs and AltCoordinates #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    0eabaa0 View commit details
    Browse the repository at this point in the history

  2. storage: Add varint to store DataSchema entry length. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    5250927 View commit details
    Browse the repository at this point in the history

  3. storage: Skip data entries if equals to defaults. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    d9a7bf1 View commit details
    Browse the repository at this point in the history

  4. storage: Replace string with binary file data encoding. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    1a281da View commit details
    Browse the repository at this point in the history

  5. storage: Add sampleIndexConfiguration.fileDataConfiguration. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    add8038 View commit details
    Browse the repository at this point in the history

  6. storage: Fix junit tests. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    3bff019 View commit details
    Browse the repository at this point in the history

  7. storage: Add VariantQueryParam "source" #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    42fcd2b View commit details
    Browse the repository at this point in the history

  8. storage: Fix NPE building sample index. #TASK-6765

    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    7fac8bd View commit details
    Browse the repository at this point in the history

  9. storage: Ensure SampleIndexConfiguration always exists. Add migration… 

    …. #TASK-6765
    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    4037883 View commit details
    Browse the repository at this point in the history

  10. app: Fix migration EnsureSampleIndexConfigurationIsAlwaysDefined. #TA… 

    …SK-6765
    @j-coll
    j-coll committed Sep 11, 2024
    Configuration menu
    Copy the full SHA
    98be159 View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2024

  1. Merge branch 'develop' into TASK-6765

    @j-coll
    j-coll committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    7529652 View commit details
    Browse the repository at this point in the history

  2. storage: Fix compilation issues #TASK-6765

    @j-coll
    j-coll committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    1f92650 View commit details
    Browse the repository at this point in the history

Commits on Oct 18, 2024

  1. storage: Rename schema "entry" with "document". Create parent schema … 

    …class. #TASK-6765
    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    b02d45d View commit details
    Browse the repository at this point in the history

  2. storage: Rename IndexFieldConfiguration with FieldConfiguration #TASK… 

    …-6765
    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    f5fd1aa View commit details
    Browse the repository at this point in the history

  3. storage: Rename SampleVariantIndexEntry to SampleIndexVariant and Ann… 

    …otationIndexEntry to SampleIndexVariantAnnotation #TASK-6765
    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    499b5e1 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'develop' into TASK-6765

    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    9526fe0 View commit details
    Browse the repository at this point in the history

  5. storage: Fix compilation issue. #TASK-6765

    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    ec84b74 View commit details
    Browse the repository at this point in the history

  6. storage: Rename "canUseThisExecutor" with "acceptsQuery" #TASK-6765

    @j-coll
    j-coll committed Oct 18, 2024
    Configuration menu
    Copy the full SHA
    d7f17b1 View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2024

  1. Merge branch 'develop' into TASK-6765

    @j-coll
    j-coll committed Nov 8, 2024
    Configuration menu
    Copy the full SHA
    faaaad5 View commit details
    Browse the repository at this point in the history

Commits on Nov 11, 2024

  1. Push echo to debug pull-request-approve #TASK-6765

    @juanfeSanahuja
    juanfeSanahuja committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    4f4ce7e View commit details
    Browse the repository at this point in the history

Commits on Nov 15, 2024

  1. storage: Fix tests. #TASK-6765

    @j-coll
    j-coll committed Nov 15, 2024
    Configuration menu
    Copy the full SHA
    d6109e7 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'TASK-6765' of github.com:opencb/opencga into TASK-6765

    @j-coll
    j-coll committed Nov 15, 2024
    Configuration menu
    Copy the full SHA
    bf7f84e View commit details
    Browse the repository at this point in the history