Plugins

A plugin framework has been developed to be able to add new analysis to CellMaps. Analysis are mainly developed by us, but third-party developers are invited to add more plugins. Plugins have been organized into four categories:

• Network analysis: these plugins will permit researchers to analyze network characteristics as topological parameters and to calculate the modular structure of the network using several algorithm.
  • Communities detection analysis
  • Topological study
• Functional Analysis: these plugins allow you to analyze the functions that are represented in the network using Gene Ontology as reference and other databases as human gene-disease databases.
  • Network enrichment analysis Evaluates the cooperative behaviour of the list as a subnetwork module. See
  • Network set enrichment analysis Finds significant subnetworks of protein-protein interactions within a list of ranked genes/proteins
  • GO enrichment analysis: Provides significant over-representation of functional annotations by single enrichment analysis