build triggered by submodule openMetadataInitiative/openMINDS_stimula…

…tion version v1
openMetadataInitiative · Dec 5, 2023 · 66ec475 · 66ec475
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Showing 4 changed files with 176 additions and 4 deletions.
diff --git a/schemas/latest/stimulation/activity/stimulationActivity.schema.omi.json b/schemas/latest/stimulation/activity/stimulationActivity.schema.omi.json
@@ -169,11 +169,14 @@
     },
     "https://openminds.ebrains.eu/vocab/stimulus": {
       "_instruction": "Add all stimuli used during this activity.",
-      "_linkedTypes": [],
+      "_linkedTypes": [
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+      ],
       "label": "Stimulus",
       "labelPlural": "Stimuli",
       "minItems": 1,
       "name": "stimulus",
+      "nameForReverseLink": null,
       "namePlural": "stimuli",
       "type": "array",
       "uniqueItems": true

diff --git a/schemas/latest/stimulation/stimulus/ephysStimulus.schema.omi.json b/schemas/latest/stimulation/stimulus/ephysStimulus.schema.omi.json
@@ -1,9 +1,95 @@
 {
+  "_categories": [
+    "stimulus"
+  ],
   "_type": "https://openminds.ebrains.eu/stimulation/EphysStimulus",
   "color": "#A2C3DF",
   "label": "Ephys stimulus",
   "name": "EphysStimulus",
   "properties": {
+    "https://openminds.ebrains.eu/vocab/deliveredBy": {
+      "_instruction": "Add the device used to deliver this stimulus.",
+      "_linkedTypes": [
+        "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
+        "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
+        "https://openminds.ebrains.eu/ephys/PipetteUsage",
+        "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage"
+      ],
+      "label": "Delivered by",
+      "name": "deliveredBy",
+      "nameForReverseLink": null
+    },
+    "https://openminds.ebrains.eu/vocab/description": {
+      "_instruction": "Enter a short text describing this stimulus.",
+      "description": "Longer statement or account giving the characteristics of someone or something.",
+      "formatting": "text/markdown",
+      "label": "Description",
+      "labelPlural": "Descriptions",
+      "multiline": true,
+      "name": "description",
+      "namePlural": "descriptions",
+      "type": "string"
+    },
+    "https://openminds.ebrains.eu/vocab/epoch": {
+      "_embeddedTypes": [
+        "https://openminds.ebrains.eu/core/QuantitativeValue"
+      ],
+      "_instruction": "Enter the total epoch length of this stimulus.",
+      "label": "Epoch",
+      "name": "epoch",
+      "nameForReverseLink": null
+    },
+    "https://openminds.ebrains.eu/vocab/generatedBy": {
+      "_instruction": "Add the device used to generate this stimulus.",
+      "_linkedTypes": [
+        "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
+        "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
+        "https://openminds.ebrains.eu/ephys/PipetteUsage",
+        "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage"
+      ],
+      "label": "Generated by",
+      "name": "generatedBy",
+      "nameForReverseLink": null
+    },
+    "https://openminds.ebrains.eu/vocab/internalIdentifier": {
+      "_instruction": "Enter the identifier (or label) of this stimulus that is used within the corresponding data files to identify this stimulus.",
+      "description": "Term or code that identifies someone or something within a particular product.",
+      "formatting": "text/plain",
+      "label": "Internal identifier",
+      "labelPlural": "Internal identifiers",
+      "multiline": false,
+      "name": "internalIdentifier",
+      "namePlural": "internalIdentifiers",
+      "type": "string"
+    },
+    "https://openminds.ebrains.eu/vocab/lookupLabel": {
+      "_instruction": "Enter a lookup label for this stimulus that may help you to find this instance more easily.",
+      "formatting": "text/plain",
+      "label": "Lookup label",
+      "labelPlural": "Lookup labels",
+      "multiline": false,
+      "name": "lookupLabel",
+      "namePlural": "lookupLabels",
+      "type": "string"
+    },
+    "https://openminds.ebrains.eu/vocab/specification": {
+      "_instruction": "Add the specification information for this stimulus.",
+      "_linkedTypes": [
+        "https://openminds.ebrains.eu/core/Configuration",
+        "https://openminds.ebrains.eu/core/File",
+        "https://openminds.ebrains.eu/core/FileBundle",
+        "https://openminds.ebrains.eu/core/PropertyValueList"
+      ],
+      "description": "Detailed and precise presentation of, or proposal for something.",
+      "label": "Specification",
+      "labelPlural": "Specifications",
+      "minItems": 1,
+      "name": "specification",
+      "nameForReverseLink": null,
+      "namePlural": "specifications",
+      "type": "array",
+      "uniqueItems": true
+    },
     "https://openminds.ebrains.eu/vocab/type": {
       "_instruction": "Add the type that describe this electrical stimulus.",
       "_linkedTypes": [
@@ -16,5 +102,8 @@
       "nameForReverseLink": null,
       "namePlural": "types"
     }
-  }
+  },
+  "required": [
+    "https://openminds.ebrains.eu/vocab/internalIdentifier"
+  ]
 }
diff --git a/vocab/categories.json b/vocab/categories.json
@@ -185,6 +185,9 @@
       "https://openminds.ebrains.eu/ephys/Pipette",
       "https://openminds.ebrains.eu/specimenPrep/SlicingDevice"
     ],
+    "stimulus": [
+      "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+    ],
     "stimulusType": [
       "https://openminds.ebrains.eu/controlledTerms/AuditoryStimulusType",
       "https://openminds.ebrains.eu/controlledTerms/ElectricalStimulusType",

diff --git a/vocab/properties.json b/vocab/properties.json
@@ -3236,6 +3236,28 @@
       ]
     }
   },
+  "https://openminds.ebrains.eu/vocab/deliveredBy": {
+    "asEdge": {
+      "canPointTo": {
+        "latest": [
+          "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
+          "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
+          "https://openminds.ebrains.eu/ephys/PipetteUsage",
+          "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage"
+        ]
+      },
+      "nameForReverseLink": null
+    },
+    "description": null,
+    "label": "Delivered by",
+    "name": "deliveredBy",
+    "semanticEquivalent": [],
+    "usedIn": {
+      "latest": [
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+      ]
+    }
+  },
   "https://openminds.ebrains.eu/vocab/descendedFrom": {
     "asEdge": {
       "canPointTo": {
@@ -3453,6 +3475,7 @@
         "https://openminds.ebrains.eu/specimenPrep/SlicingDevice",
         "https://openminds.ebrains.eu/specimenPrep/TissueCulturePreparation",
         "https://openminds.ebrains.eu/specimenPrep/TissueSampleSlicing",
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus",
         "https://openminds.ebrains.eu/stimulation/StimulationActivity"
       ],
       "v1.0": [
@@ -4524,6 +4547,25 @@
       ]
     }
   },
+  "https://openminds.ebrains.eu/vocab/epoch": {
+    "asEdge": {
+      "canPointTo": {
+        "latest": [
+          "https://openminds.ebrains.eu/core/QuantitativeValue"
+        ]
+      },
+      "nameForReverseLink": null
+    },
+    "description": null,
+    "label": "Epoch",
+    "name": "epoch",
+    "semanticEquivalent": [],
+    "usedIn": {
+      "latest": [
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+      ]
+    }
+  },
   "https://openminds.ebrains.eu/vocab/ethicsAssessment": {
     "asEdge": {
       "canPointTo": {
@@ -5153,6 +5195,28 @@
       ]
     }
   },
+  "https://openminds.ebrains.eu/vocab/generatedBy": {
+    "asEdge": {
+      "canPointTo": {
+        "latest": [
+          "https://openminds.ebrains.eu/ephys/ElectrodeArrayUsage",
+          "https://openminds.ebrains.eu/ephys/ElectrodeUsage",
+          "https://openminds.ebrains.eu/ephys/PipetteUsage",
+          "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage"
+        ]
+      },
+      "nameForReverseLink": null
+    },
+    "description": null,
+    "label": "Generated by",
+    "name": "generatedBy",
+    "semanticEquivalent": [],
+    "usedIn": {
+      "latest": [
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+      ]
+    }
+  },
   "https://openminds.ebrains.eu/vocab/geneticStrainType": {
     "asEdge": {
       "canPointTo": {
@@ -7008,7 +7072,8 @@
         "https://openminds.ebrains.eu/ephys/Recording",
         "https://openminds.ebrains.eu/ephys/RecordingActivity",
         "https://openminds.ebrains.eu/sands/AtlasAnnotation",
-        "https://openminds.ebrains.eu/sands/CustomAnnotation"
+        "https://openminds.ebrains.eu/sands/CustomAnnotation",
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
       ],
       "v1.0": [
         "https://openminds.ebrains.eu/core/Subject",
@@ -8226,6 +8291,7 @@
         "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage",
         "https://openminds.ebrains.eu/specimenPrep/TissueCulturePreparation",
         "https://openminds.ebrains.eu/specimenPrep/TissueSampleSlicing",
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus",
         "https://openminds.ebrains.eu/stimulation/StimulationActivity"
       ],
       "v2.0": [
@@ -12555,7 +12621,9 @@
     "asEdge": {
       "canPointTo": {
         "latest": [
+          "https://openminds.ebrains.eu/core/Configuration",
           "https://openminds.ebrains.eu/core/File",
+          "https://openminds.ebrains.eu/core/FileBundle",
           "https://openminds.ebrains.eu/core/PropertyValueList"
         ],
         "v3.0": [
@@ -12584,7 +12652,8 @@
       "latest": [
         "https://openminds.ebrains.eu/core/ContentType",
         "https://openminds.ebrains.eu/sands/AtlasAnnotation",
-        "https://openminds.ebrains.eu/sands/CustomAnnotation"
+        "https://openminds.ebrains.eu/sands/CustomAnnotation",
+        "https://openminds.ebrains.eu/stimulation/EphysStimulus"
       ],
       "v2.0": [
         "https://openminds.ebrains.eu/core/ContentType"
@@ -12891,6 +12960,14 @@
     }
   },
   "https://openminds.ebrains.eu/vocab/stimulus": {
+    "asEdge": {
+      "canPointTo": {
+        "latest": [
+          "https://openminds.ebrains.eu/stimulation/EphysStimulus"
+        ]
+      },
+      "nameForReverseLink": null
+    },
     "description": null,
     "label": "Stimulus",
     "labelPlural": "Stimuli",