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Include smoothed count in cvd table #501
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…nd count.avg.smoothed.agg in cvd table
this would close #456 & is also used in new downsampling analysis for P(s) curves (so that downsampled coolers have same number of pixels) for the docs (open2c/open2c_examples#30). This PR would make Only two things I can think to add:
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proposal from March 4 discussion: update default table returned by expected_cis as follows:
for the sake of de-bugging / provenance we would not longer drop columns in the internal functions (ie. modify:
describe the role of the keys in the cols keyword argument into a new
add a note next to DEFAULT_CVD_COLS to check the docstring for
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…for column names in cvd table to expected_cis() and agg_smooth_cvd() 3. Add dist_bp and contact_freq columns to cvd table and keep all other columns
This PR enables smoothing for raw counts (counts.avg) in contacts-versus-distance (cvd) DataFrames .
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