remove deletable files

open2c · Oct 10, 2024 · a20d91b · a20d91b
1 parent 3472949
commit a20d91b
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Showing 9 changed files with 5 additions and 4 deletions.
diff --git a/cooltools/api/expected.py b/cooltools/api/expected.py
@@ -1036,7 +1036,7 @@ def per_region_smooth_cvd(
 
     return cvd
 
-def _transformer(p, weight1, weight2):
+def _balance_transform(p, weight1, weight2):
     return p["count"] * p[weight1] * p[weight2]
 
 # user-friendly wrapper for diagsum_symm and diagsum_pairwise - part of new "public" API
@@ -1183,7 +1183,7 @@ def expected_cis(
         # define balanced data transform:
         weight1 = clr_weight_name + "1"
         weight2 = clr_weight_name + "2"
-        transforms = {"balanced": partial(_transformer, weight1=weight1, weight2=weight2)}
+        transforms = {"balanced": partial(_balance_transform, weight1=weight1, weight2=weight2)}
     else:
         raise ValueError(
             "cooler is not balanced, or"
@@ -1321,7 +1321,7 @@ def expected_trans(
         # define balanced data transform:
         weight1 = clr_weight_name + "1"
         weight2 = clr_weight_name + "2"
-        transforms = {"balanced": partial(_transformer, weight1=weight1, weight2=weight2)}
+        transforms = {"balanced": partial(_balance_transform, weight1=weight1, weight2=weight2)}
     else:
         raise ValueError(
             "cooler is not balanced, or"

diff --git a/tests/data/CN.mm9.10000kb.test_sampled.cool b/tests/data/CN.mm9.10000kb.test_sampled.cool
diff --git a/tests/data/CN.mm9.1000kb.test_sampled.cool b/tests/data/CN.mm9.1000kb.test_sampled.cool
diff --git a/tests/data/test_coverage.cool b/tests/data/test_coverage.cool
diff --git a/tests/test_chr2chr1_reordered_inverted.cool b/tests/test_chr2chr1_reordered_inverted.cool
diff --git a/tests/test_chrom1_reordered.cool b/tests/test_chrom1_reordered.cool
diff --git a/tests/test_chrom1_reordered_inverted.cool b/tests/test_chrom1_reordered_inverted.cool
diff --git a/tests/test_expected.py b/tests/test_expected.py
@@ -732,4 +732,5 @@ def test_diagsum_from_array():
     exp = _diagsum_symm_dense(ar, bad_bins=list(range(3, 5)))
     exp1 = diagsum_from_array(ar, ignore_diags=0)
     exp1["balanced.avg"] = exp1["balanced.sum"] / exp1["n_valid"]
-    assert np.allclose(exp, exp1["balanced.avg"].values, equal_nan=True)
+    assert np.allclose(exp, exp1["balanced.avg"].values, equal_nan=True)
+
diff --git a/tests/test_not_reordered.cool b/tests/test_not_reordered.cool