Merge pull request #661 from open-life-science/merge-script-from-stat…

…-repo Move from stat repo scripts to extract data into CSV data and generate CSV artifacts
open-life-science · Sep 7, 2023 · 9bda376 · 9bda376
2 parents 0baa89f + 3bc9945
commit 9bda376
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diff --git a/.github/workflows/update-artifacts.yml b/.github/workflows/update-artifacts.yml
@@ -0,0 +1,47 @@
+name: Update artifacts
+
+on:
+  schedule:
+    # We'll run this weekly
+    - cron:  '0 12 * * 1'
+  workflow_dispatch:
+
+jobs:
+  update-schedule:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Setup Miniconda
+        uses: conda-incubator/[email protected]
+        with:
+        #  channels: conda-forge,defaults
+        #  channel-priority: true
+          activate-environment: ols-website
+          environment-file: environment.yml
+
+      - shell: bash -el {0}
+        run: |
+          conda info
+          conda list
+          conda config --show-sources
+          conda config --show
+
+      - name: Update people data artifacts
+        shell: bash -el {0}
+        run: |
+          python bin/prepare_website_data.py extractfullpeopledata
+
+      - name: Update library artifacts
+        shell: bash -el {0}
+        run: |
+          python bin/prepare_website_data.py extractlibrary
+
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v4
+        with:
+          commit-message: Update schedule
+          title: Automatic schedule update
+          body: Automatic schedule update done via GitHub Action once a week
+          base: main
+          branch: schedule-update
+          delete-branch: true
diff --git a/_data/artifacts/library.csv b/_data/artifacts/library.csv
diff --git a/_data/artifacts/people.csv b/_data/artifacts/people.csv
diff --git a/_data/artifacts/people_per_cohort.csv b/_data/artifacts/people_per_cohort.csv
diff --git a/_data/artifacts/projects.csv b/_data/artifacts/projects.csv
diff --git a/_data/artifacts/roles/expert.csv b/_data/artifacts/roles/expert.csv
diff --git a/_data/artifacts/roles/facilitator.csv b/_data/artifacts/roles/facilitator.csv
@@ -0,0 +1,22 @@
+,city,country,first-name,last-name,pronouns,country_3,continent,longitude,latitude,ols-5,ols-2,ols-3,ols-4,ols-1,ols-6,ols-8,ols-7
+amangoel185,Manchester,United Kingdom,Aman,Goel,he/him/his,GBR,Europe,-2.2451148,53.4794892,,,,,,,,facilitator
+batoolmm,Liverpool,Saudi Arabia,Batool,Almarzouq,She/Her,SAU,Asia,-2.99168,53.4071991,facilitator,,,facilitator,,facilitator,,
+complexbrains,Montreal,Canada,Isil,Poyraz Bilgin,Dr. or Miss,CAN,North America,-73.5698065,45.5031824,,,,,,facilitator,,
+da5nsy,Washington Dc,United States,Danny,Garside,he/him,USA,North America,-77.0365427,38.8950368,,,,facilitator,,,,
+ekaroune,Portsmouth,United Kingdom,Emma,Karoune,she/her,GBR,Europe,-1.0906023,50.800031,,,,facilitator,,,,
+glado718,Nairobi,Kenya,Gladys,Rotich,,KEN,Africa,36.8288420082562,-1.3026148499999999,,,,,,,,facilitator
+ismael-kg,London,United Kingdom,Ismael,Kherroubi Garcia,He/him,GBR,Europe,-0.14405508452768728,51.4893335,,,,,,facilitator,,
+jafsia,Yaounde,Cameroon,Elisee,Jafsia,He/Him,CMR,Africa,11.5213344,3.8689867,,,,,,,,facilitator
+karegapauline,Nairobi,Kenya,Pauline,Karega,she/her,KEN,Africa,36.8288420082562,-1.3026148499999999,,,,,,facilitator,,
+landimi2,Nairobi,Kenya,Michael,Landi,He/Him,KEN,Africa,36.8288420082562,-1.3026148499999999,facilitator,,,facilitator,,,,
+laurah-nyasita-ondari,Nairobi,Kenya,Laurah,Ondari,She/Her,KEN,Africa,36.8288420082562,-1.3026148499999999,,,,,,,,facilitator
+macziatko,Dublin,Ireland,Nina,Trubanová,she/her/hers,IRL,Europe,-6.2605593,53.3493795,,,,,,,,facilitator
+manulera,Paris,France,Manuel,Lera Ramirez,He/him,FRA,Europe,2.3200410217200766,48.8588897,facilitator,,,facilitator,,,,
+melibleq,São Paulo,Brazil,Melissa,Black,she/her,BRA,South America,-47.1583944,-1.2043218,,,,,,,,facilitator
+mgawe-cavin,"Nairobi, Kenya",Kenya,Cavin,Mgawe,He,KEN,Africa,36.8288420082562,-1.3026148499999999,,,,,,facilitator,,
+msundukova,Bilbao,Spain,Mayya,Sundukova,she/her,ESP,Europe,-2.9350039,43.2630018,facilitator,,facilitator,facilitator,,facilitator,,
+peranti,Paris,France,Pradeep,Eranti,,FRA,Europe,2.3200410217200766,48.8588897,,,,,,,,facilitator
+phaarouknucleus,Kano,Nigeria,Umar Farouk,Ahmad,,NGA,Africa,8.5364136,11.8948389,,,,,,,,facilitator
+slldec,Buenos Aires,Argentina,Sabrina,López,she/her/ella,ARG,South America,-58.4370894,-34.6075682,,,,,,,,facilitator
+cassmurph,,Ireland,Cassandra,Murphy,She/Her,IRL,Europe,,,,,,,,,,facilitator
+fnyasimi,,Kenya,Festus,Nyasimi,He/Him,KEN,Africa,,,facilitator,,,facilitator,,facilitator,,
diff --git a/_data/artifacts/roles/mentor.csv b/_data/artifacts/roles/mentor.csv
diff --git a/_data/artifacts/roles/organizer.csv b/_data/artifacts/roles/organizer.csv
@@ -0,0 +1,6 @@
+,city,country,first-name,last-name,pronouns,country_3,continent,longitude,latitude,ols-5,ols-2,ols-3,ols-4,ols-1,ols-6,ols-8,ols-7
+bebatut,Clermont-Ferrand,France,Bérénice,Batut,she/her,FRA,Europe,3.0819427,45.7774551,organizer,organizer,organizer,organizer,organizer,organizer,organizer,organizer
+malvikasharan,London,United Kingdom,Malvika,Sharan,she/her,GBR,Europe,-0.14405508452768728,51.4893335,organizer,organizer,organizer,organizer,organizer,organizer,organizer,organizer
+emmyft,,Netherlands,Emmy,Tsang,she/her,NLD,Europe,,,organizer,,organizer,organizer,,organizer,organizer,organizer
+pazbc,,Argentina,Paz,Bernaldo,she/her,ARG,South America,,,organizer,,,,,organizer,organizer,organizer
+yochannah,,United Kingdom,Yo,Yehudi,they/them,GBR,Europe,,,organizer,organizer,organizer,organizer,organizer,organizer,organizer,organizer