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Bump all dependencies to latest version #52

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15 changes: 15 additions & 0 deletions .github/dependabot.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
# To get started with Dependabot version updates, you'll need to specify which
# package ecosystems to update and where the package manifests are located.
# Please see the documentation for all configuration options:
# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates

version: 2
updates:
- package-ecosystem: pip
directory: /
schedule:
interval: weekly
- package-ecosystem: github-actions
directory: /
schedule:
interval: weekly
2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ jobs:
os:
- ubuntu-latest
- windows-latest
python-version: ['3.11']
python-version: ['3.10', '3.11', '3.12']
steps:
- uses: actions/checkout@v4
- name: Install poetry
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -4,7 +4,7 @@
[![DOI:10.3389/fdgth.2022.788124](http://img.shields.io/badge/DOI-10.3389/fdgth.2022.788124-70286A.svg)](https://doi.org/10.3389/fdgth.2022.788124)
[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)

*Requires python 3.8+*
*Requires Python 3.10+*

The Automated pipeline for Consistent Outputs from Research Publications (Auto-CORPus) is a tool for the standardisation and conversion of publication HTML to three convenient machine-interpretable outputs to support biomedical text analytics. Firstly, Auto-CORPus can be configured to convert HTML from various publication sources to [BioC format](http://bioc.sourceforge.net/). Secondly, Auto-CORPus transforms publication tables to a JSON format to store, exchange and annotate table data between text analytics systems. Finally, Auto-CORPus extracts abbreviations declared within publication text and provides an abbreviations JSON output that relates an abbreviation with the full definition.

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