update polypred to take a weighted sum of PRS instead of a weighted s… #28
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| name: CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - '.gitignore' | |
| - 'LICENSE' | |
| - 'README.md' | |
| pull_request: | |
| paths-ignore: | |
| - '.gitignore' | |
| - 'LICENSE' | |
| - 'README.md' | |
| schedule: | |
| - cron: "0 0 1 */3 *" # Every 3 months | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| ci: | |
| runs-on: ubuntu-latest | |
| name: run tests (${{ matrix.config.id }} env) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {id: latest, envfile: polyfun.yml} | |
| - {id: locked, envfile: polyfun.yml.lock} | |
| env: | |
| envfile: ${{ matrix.config.envfile }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ env.envfile }} | |
| environment-name: ${{ matrix.config.id }} | |
| cache-environment: true | |
| cache-environment-key: ${{ matrix.config.id }}-${{ hashFiles(env.envfile) }}-0 | |
| # WARNING: FINEMAP is non-commercial software | |
| # | |
| # Do not blindly copy the code below without first checking your use case | |
| # against the license terms. This is not legal advice. Seek professional | |
| # help if you need it. Good luck! | |
| # | |
| # http://christianbenner.com/license_finemap_v1.4.html | |
| - name: Install FINEMAP | |
| run: | | |
| wget http://christianbenner.com/finemap_v1.4.1_x86_64.tgz | |
| tar xf finemap_v1.4.1_x86_64.tgz | |
| cat finemap_v1.4.1_x86_64/LICENSE | |
| - name: Test | |
| run: python test_polyfun.py --finemap-exe finemap_v1.4.1_x86_64/finemap_v1.4.1_x86_64 |