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Added FIndCentroids notebook and a multiple channels ilastik notebook #47

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Hi,

Here is what I did.

  • There is an ilastik notebook very much like the previous one but working with multiple channels
  • There is a python notebook that follows up on the ilastik notebook. It needs a bit of a better introduction to the goal of the analysis and some code beautification but it works very nicely. It is also a very common type of analysis.
    For the merge, do not take into account the Dockerfile changes. I just commented out some stuff to lighten the building. The only requirement that has to be taken into the python3 environment is scikit-image.
    I'll send a separate mail with further cosiderations about running this notebooks

juliomateoslangerak and others added 30 commits January 20, 2020 10:20
TODO Clean MCN
configured for workshop server
# Conflicts:
#	docker/environment-python3-omero.yml
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2 participants