Merge pull request #45 from jburel/zarr_description

remove the omero section

notebooks/zarr-public-s3-multiscale.ipynb

@@ -2026,42 +2026,6 @@
     "    display(a)"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "The Zarr image arrays only contain the image pixel data. An extension to the format stores the metadata required for viewing the image in a file `omero.json`.\n",
-    "\n",
-    "Note for the complete metadata you will have to query the IDR using the OMERO APIs:\n",
-    "- https://docs.openmicroscopy.org/omero/5/developers/json-api.html\n",
-    "- https://docs.openmicroscopy.org/omero/5/developers/Python.html"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 4,
-   "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Project: idr0083-lamers-sarscov2/experimentA\n",
-      "Dataset: Intestinal Organoids\n",
-      "Pixel size: 0.000996747 x 0.000996747 x None\n"
-     ]
-    }
-   ],
-   "source": [
-    "viewerinfo = requests.get(f'{endpoint}/{imagepath}/omero.json').json()\n",
-    "\n",
-    "meta = viewerinfo['meta']\n",
-    "pxsize = viewerinfo['pixel_size']\n",
-    "print(f'Project: {meta[\"projectName\"]}')\n",
-    "print(f'Dataset: {meta[\"datasetName\"]}')\n",
-    "print(f'Pixel size: {pxsize[\"x\"]} x {pxsize[\"y\"]} x {pxsize[\"z\"]}')"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -2261,7 +2225,7 @@
    },
    "source": [
     "### License (BSD 2-Clause)\n",
-    "Copyright (C) 2020-2021 University of Dundee. All Rights Reserved.\n",
+    "Copyright (C) 2020-2022 University of Dundee. All Rights Reserved.\n",
     "\n",
     "Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:\n",
     "\n",
@@ -2273,7 +2237,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -2287,7 +2251,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.8"
+   "version": "3.9.12"
   }
  },
  "nbformat": 4,