Code

Plates#57

Code

Merged

joshmoore merged 21 commits intoome:masterome/ome-zarr-py:masterfrom will-moore:plateswill-moore/ome-zarr-py:platesCopy head branch name to clipboardNov 17, 2020

+235

Commits

Commits on Oct 20, 2020

• HCS: add Plate spec

  joshmoore

  committed
  7b0a239

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Commits on Oct 21, 2020

• HCS: only first field is visible

  joshmoore

  committed
  c9f4901

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Commits on Oct 22, 2020

• Stitch Plate Wells into pyramid

  

  will-moore

  authored and

  joshmoore

  committed
  f97f5a8

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• Cleanup and fix mypy

  joshmoore

  committed
  9aa5171

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• Calculate optimal resolution level so stitched plate < 3000 pixels

  will-moore

  committed
  b8e130d

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• Add 'plates' metadata to layers in napari

  will-moore

  committed
  5cda803

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• black fix

  will-moore

  committed
  31d9da6

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Commits on Oct 23, 2020

• Add well outlines plates in napari

  will-moore

  committed
  c0c308f

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Commits on Oct 25, 2020

• Pick pyramid level based on first image pyramid

  will-moore

  committed
  b88240e

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• Read plateAcquisitions from plate_data

  will-moore

  committed
  1f51e55

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Commits on Oct 26, 2020

• lazy get_tile() returns 5D data, not 2D plane

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  will-moore

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Commits on Oct 27, 2020

• Black fixes

  will-moore

  committed
  1b406e7

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• Black fixes napari.py

  will-moore

  committed
  c27d0bc

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• More Black fixes

  will-moore

  committed
  0c7ddb7

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• Fix mypy

  will-moore

  committed
  f965169

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• Add comment

  will-moore

  committed
  ecc2859

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Commits on Oct 29, 2020

• Add all plate metadata to layer.metadata

  will-moore

  committed
  a78f37c

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Commits on Nov 5, 2020

• Update to use spec from omero-cli-zarr PR 42. Handle sparse wells

  will-moore

  committed
  d73c3e7

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• Support loading of HCS Well, show fields in grid

  will-moore

  committed
  3e52d43

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Commits on Nov 12, 2020

• Support hierarchy with no acquisition path

  will-moore

  committed
  5efffc7

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Commits on Nov 16, 2020

• Remove print or use LOGGER instead

  will-moore

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  450483e

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