Adjust README #72
Adjust README #72
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README.md
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| If a dialog in napari pops up, encouraging you to choose a reader, choose ``napari-ome-zarr`` and click OK. |
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Could mention that you can specify the plugin on cli with napari --plugin napari-ome-zarr "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/9836842.zarr/"
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But, confusingly, when opening from S3, napari is not confused about which plugin to use.
Whereas locally, it is different, such as
napari --plugin napari-ome-zarr '6001240.zarr'
Does not produce a dialog, whereas
napari '6001240.zarr'
Produces
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I don't know why the difference when the file is local. But you say "If a dialog in napari pops up, encouraging you to choose a reader, choose napari-ome-zarr and click OK."
If that happens, you can stop it happening with --plugin napari-ome-zarr, regardless of whether the file is local or not. So I would mention --plugin napari-ome-zarr option before mentioning local usage
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| napari.run() | ||
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| If single zarray is passed to the plugin, it will be opened without the use of |
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When I tried this, I didn't need the napari.run() at least in a python terminal
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Yes, can confirm this in python terminal. But if you leave it out in the script, then napari opens and immediately closes. With the napari.run() in the script, napari persists and is usable.
Codecov ReportBase: 92.43% // Head: 88.33% // Decreases project coverage by
Additional details and impacted files@@ Coverage Diff @@
## main #72 +/- ##
==========================================
- Coverage 92.43% 88.33% -4.10%
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Files 3 2 -1
Lines 185 180 -5
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- Hits 171 159 -12
- Misses 14 21 +7
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Tested the README workflow
Adjusted:
0subfolder opening routine, as it crashes atmcc @jburel @will-moore