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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 4

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 231 repositories
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Nov 26, 2024
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 1 Updated Nov 26, 2024
  • crosscheckFingerprintCaller Public

    To call sequencing library swaps and matches from CrosscheckFingerprints output given OICR metadata

    oicr-gsi/crosscheckFingerprintCaller’s past year of commit activity
    WDL 0 0 0 0 Updated Nov 26, 2024
  • crosscheck_fingerprint_caller Public

    To call sequencing library swaps and matches from CrosscheckFingerprints output given OICR metadata

    oicr-gsi/crosscheck_fingerprint_caller’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2024
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 0 Updated Nov 25, 2024
  • smmipQCReport Public

    Scripts to generate a summary table with QC metrics for each smMIP libraries

    oicr-gsi/smmipQCReport’s past year of commit activity
    Python 0 0 0 0 Updated Nov 25, 2024
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 4 5 7 Updated Nov 22, 2024
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Nov 22, 2024
  • bamToFastq Public

    Generate R1 and R2

    oicr-gsi/bamToFastq’s past year of commit activity
    WDL 0 0 0 0 Updated Nov 21, 2024
  • flask_ui Public

    projectconfig UI

    oicr-gsi/flask_ui’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 21, 2024
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