Overview
This release adds support for version 1.1 of the TES schema as part of the GA4GH community.
Getting Started
See step by step guides on using Funnel to run and track tasks on the documentation page at https://ohsu-comp-bio.github.io/funnel
Installing
Homebrew
Funnel is available on macOS through Homebrew:
brew tap ohsu-comp-bio/formula
brew install funnel- Homebrew Formula: https://github.com/ohsu-comp-bio/homebrew-formula
- Docker image: https://quay.io/repository/ohsu-comp-bio/funnel?tab=tags
Install Script
Alternatively, Funnel may be installed with the installer script. By default it installs the latest release into the $HOME/.local/bin directory:
/bin/bash -c "$(curl -fsSL https://github.com/ohsu-comp-bio/funnel/releases/download/0.11.0/install.sh)"What's Changed
- TESv1.1 support
- Added initial Nextflow support
- Updated Homebrew installation and Docker images
Credits
Developed by the Ellrott Lab at Oregon Health & Science University.
Development was lead by Kyle Ellrott (@kellrott) with contributions from Alex Kanitz (@uniqueg), Adam Struck (@adamstruck), Adam Novak (@adamnovak), and Liam Beckman (@lbeckman314) with Data Analysis and HPC guidance by Jordan Lee (@jordan2lee).
Special thanks to Lakshya Garg (@LakiG) and Alex for their work on the TES Compliance Suite and to @bentsherman and @vsmalladi for continuing collaboration with Nextflow and TES on Azure.
Changelog
- PR #749 Add support for TES v1.1
- PR #761 Add Nextflow (nf-canary) tests to Funnel
- PR #724 Create dependabot.yml
Full Changelog: 0.10.1...0.11.0
