build(deps): bump the dependabot group across 1 directory with 6 updates #501
Workflow file for this run
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name: Nextflow Test | |
on: | |
push: | |
pull_request: | |
jobs: | |
build: | |
uses: ./.github/workflows/build.yml | |
nextflow: | |
needs: build | |
runs-on: ubuntu-latest | |
steps: | |
- name: Download Funnel | |
uses: actions/download-artifact@v4 | |
with: | |
name: funnel | |
- name: Start Funnel | |
run: | | |
chmod +x ./funnel | |
./funnel server --LocalStorage.AllowedDirs $HOME run & | |
- name: Install Nextflow | |
run: | | |
git clone https://github.com/nextflow-io/nextflow | |
cd nextflow | |
make compile | |
- name: Install nf-canary and GA4GH-TES plugin | |
run: | | |
git clone https://github.com/seqeralabs/nf-canary | |
cd nf-canary | |
cat <<EOF >> nextflow.config | |
plugins { | |
id 'nf-ga4gh' | |
} | |
process.executor = 'tes' | |
tes.endpoint = 'http://localhost:8000' | |
EOF | |
- name: Run nf-canary tests | |
run: | | |
./nextflow/nextflow run nf-canary/main.nf |