Merge pull request ioos#194 from ocefpaf/maintenance

Maintenance
ocefpaf · May 8, 2024 · 4910734 · 4910734
2 parents fdec369 + bdab0f8
commit 4910734
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diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -2,9 +2,14 @@
 
 version: 2
 updates:
+
   - package-ecosystem: "github-actions"
     directory: "/"
     schedule:
       interval: "daily"
     labels:
       - "Bot"
+    groups:
+      github-actions:
+        patterns:
+          - '*'
diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml
@@ -10,10 +10,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4
 
       - name: Setup Micromamba
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
         with:
           environment-name: IOOS
           init-shell: bash
@@ -29,7 +29,7 @@ jobs:
 
       - name: GitHub Pages action
         if: github.ref == 'refs/heads/main'
-        uses: peaceiris/actions-gh-pages@v4
+        uses: peaceiris/actions-gh-pages@4f9cc6602d3f66b9c108549d475ec49e8ef4d45e #v4
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: jupyterbook/_build/html
diff --git a/.github/workflows/test-env.yml b/.github/workflows/test-env.yml
@@ -12,10 +12,10 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4
 
       - name: Setup Micromamba
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
         with:
           environment-name: IOOS
           init-shell: bash

diff --git a/.github/workflows/test_data_access_notebooks.yml b/.github/workflows/test_data_access_notebooks.yml
@@ -8,10 +8,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4
 
       - name: Setup Micromamba
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
         with:
           environment-name: IOOS
           init-shell: bash

diff --git a/.github/workflows/test_data_analysis_and_visualization_notebooks.yml b/.github/workflows/test_data_analysis_and_visualization_notebooks.yml
@@ -8,10 +8,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4
 
       - name: Setup Micromamba
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
         with:
           environment-name: IOOS
           init-shell: bash

diff --git a/.github/workflows/test_data_management_notebooks.yml b/.github/workflows/test_data_management_notebooks.yml
@@ -8,10 +8,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4
 
       - name: Setup Micromamba
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
         with:
           environment-name: IOOS
           init-shell: bash

diff --git a/...erbook/content/code_gallery/data_access_notebooks/2016-12-19-exploring_csw.archived.ipynb b/...erbook/content/code_gallery/data_access_notebooks/2016-12-19-exploring_csw.archived.ipynb
@@ -131,7 +131,7 @@
    "source": [
     "kw = dict(wildCard=\"*\", escapeChar=\"\\\\\", singleChar=\"?\", propertyname=\"apiso:AnyText\")\n",
     "\n",
-    "or_filt = fes.Or([fes.PropertyIsLike(literal=(\"*%s*\" % val), **kw) for val in cf_names])\n",
+    "or_filt = fes.Or([fes.PropertyIsLike(literal=(f\"*{val}*\"), **kw) for val in cf_names])\n",
     "\n",
     "begin, end = fes_date_filter(start, stop)\n",
     "bbox_crs = fes.BBox(bbox, crs=crs)\n",
@@ -1037,7 +1037,6 @@
     }
    ],
    "source": [
-    "%matplotlib inline\n",
     "import matplotlib.pyplot as plt\n",
     "\n",
     "fig, ax = plt.subplots(figsize=(11, 2.75))\n",
@@ -1064,7 +1063,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

diff --git a/.../content/code_gallery/data_access_notebooks/2016-12-20-searching_glider_deployments.ipynb b/.../content/code_gallery/data_access_notebooks/2016-12-20-searching_glider_deployments.ipynb
@@ -765,9 +765,7 @@
     "    track_url = f\"https://gliders.ioos.us/status/api/tracks.php?dataset_id={deployment['name']}&type=full\"\n",
     "    response = requests.get(track_url)\n",
     "    if response.status_code != 200:\n",
-    "        raise OSError(\n",
-    "            \"Failed to get Glider Track for %s\" % deployment[\"deployment_dir\"]\n",
-    "        )\n",
+    "        raise OSError(f\"Failed to get Glider Track for {deployment[\"deployment_dir\"]}\")\n",
     "    geometry = parse_geometry(response.json())\n",
     "    coords = LineString(geometry[\"coordinates\"])\n",
     "    return coords"

diff --git a/...ok/content/code_gallery/data_access_notebooks/2016-12-22-boston_light_swim.archived.ipynb b/...ok/content/code_gallery/data_access_notebooks/2016-12-22-boston_light_swim.archived.ipynb
@@ -171,7 +171,7 @@
     "    )\n",
     "\n",
     "    or_filt = fes.Or(\n",
-    "        [fes.PropertyIsLike(literal=(\"*%s*\" % val), **kw) for val in config[\"cf_names\"]]\n",
+    "        [fes.PropertyIsLike(literal=(f\"*{val}*\"), **kw) for val in config[\"cf_names\"]]\n",
     "    )\n",
     "\n",
     "    not_filt = fes.Not([fes.PropertyIsLike(literal=\"GRIB-2\", **kw)])\n",
@@ -705,8 +705,6 @@
     }
    ],
    "source": [
-    "%matplotlib inline\n",
-    "\n",
     "ax = pd.concat(data).plot(figsize=(11, 2.25))"
    ]
   },
@@ -1275,7 +1273,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.0"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

diff --git a/...rbook/content/code_gallery/data_access_notebooks/2017-06-12-NCEI_RA_archive_history.ipynb b/...rbook/content/code_gallery/data_access_notebooks/2017-06-12-NCEI_RA_archive_history.ipynb
@@ -420,7 +420,7 @@
     "    )\n",
     "    # First published date.\n",
     "    pubdate = root.find(date_path, namespaces)\n",
-    "    print(\"\\nFirst published date = %s\" % util.testXMLValue(pubdate))\n",
+    "    print(f\"\\nFirst published date = {util.testXMLValue(pubdate)}\")\n",
     "\n",
     "    # Data Temporal Coverage.\n",
     "    temporal_extent_path = (\n",
@@ -450,7 +450,7 @@
     "                plat_name = MD_keywords.find(\n",
     "                    \".//gmd:keyword/gco:CharacterString\", namespaces\n",
     "                ).text\n",
-    "                print(\"Provider Platform Code = %s\" % plat_name)\n",
+    "                print(f\"Provider Platform Code = {plat_name}\")\n",
     "                df.loc[df[\"Link_Xml\"] == url, [\"provider_platform_name\"]] = plat_name\n",
     "                break\n",
     "\n",
@@ -499,7 +499,7 @@
     "    for trans_size in root.iterfind(\".//gmd:transferSize\", namespaces):\n",
     "        if trans_size.find(\".//gco:Real\", namespaces).text:\n",
     "            sizes = trans_size.find(\".//gco:Real\", namespaces).text\n",
-    "            print(\"Current AIP Size = %s MB\" % sizes)\n",
+    "            print(f\"Current AIP Size = {sizes} MB\")\n",
     "\n",
     "            df.loc[df[\"Link_Xml\"] == url, [\"package_size_mb\"]] = sizes\n",
     "            break\n",
@@ -601,7 +601,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.5"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

diff --git a/...ent/code_gallery/data_access_notebooks/2017-12-15-finding_HFRadar_currents.archived.ipynb b/...ent/code_gallery/data_access_notebooks/2017-12-15-finding_HFRadar_currents.archived.ipynb
@@ -128,7 +128,7 @@
    "source": [
     "kw = dict(wildCard=\"*\", escapeChar=\"\\\\\", singleChar=\"?\", propertyname=\"apiso:AnyText\")\n",
     "\n",
-    "or_filt = fes.Or([fes.PropertyIsLike(literal=(\"*%s*\" % val), **kw) for val in cf_names])\n",
+    "or_filt = fes.Or([fes.PropertyIsLike(literal=(f\"*{val}*\"), **kw) for val in cf_names])\n",
     "\n",
     "# Exclude GNOME returns.\n",
     "not_filt = fes.Not([fes.PropertyIsLike(literal=\"*GNOME*\", **kw)])\n",
@@ -687,7 +687,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.7"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

diff --git a/jupyterbook/content/code_gallery/data_access_notebooks/2020-10-10-GTS.ipynb b/jupyterbook/content/code_gallery/data_access_notebooks/2020-10-10-GTS.ipynb
@@ -218,10 +218,7 @@
     "\n",
     "df = pd.DataFrame(columns=[\"locationID\", \"region\", \"sponsor\", \"met\", \"wave\"])\n",
     "for month in months:\n",
-    "    url = (\n",
-    "        \"https://www.ndbc.noaa.gov/ioosstats/rpts/%s_ioos_regional.csv\"\n",
-    "        % month.replace(\"-\", \"_\")\n",
-    "    )\n",
+    "    url = f\"https://www.ndbc.noaa.gov/ioosstats/rpts/{month.replace(\"-\", \"_\")}_ioos_regional.csv\"\n",
     "    df1 = pd.read_csv(url, dtype={\"met\": float, \"wave\": float})\n",
     "    df1[\"time (UTC)\"] = pd.to_datetime(month)\n",
     "    df = pd.concat([df, df1])\n",
@@ -943,7 +940,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.4"
+   "version": "3.12.2"
   },
   "widgets": {
    "application/vnd.jupyter.widget-state+json": {

diff --git a/...allery/data_analysis_and_visualization_notebooks/2018-03-15-ssh-skillscore.archived.ipynb b/...allery/data_analysis_and_visualization_notebooks/2018-03-15-ssh-skillscore.archived.ipynb
@@ -169,7 +169,7 @@
     "    )\n",
     "\n",
     "    or_filt = fes.Or(\n",
-    "        [fes.PropertyIsLike(literal=(\"*%s*\" % val), **kw) for val in config[\"cf_names\"]]\n",
+    "        [fes.PropertyIsLike(literal=(f\"*{val}*\"), **kw) for val in config[\"cf_names\"]]\n",
     "    )\n",
     "\n",
     "    not_filt = fes.Not([fes.PropertyIsLike(literal=\"GRIB-2\", **kw)])\n",
@@ -1660,7 +1660,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.0"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

diff --git a/jupyterbook/content/code_gallery/data_management_notebooks/2020-12-08-DataToDwC.ipynb b/jupyterbook/content/code_gallery/data_management_notebooks/2020-12-08-DataToDwC.ipynb
@@ -857,7 +857,7 @@
    ],
    "source": [
     "for index, row in lut_worms.iterrows():\n",
-    "    print(\"\\n**Searching for scientific name = %s**\" % row[\"scientificName\"])\n",
+    "    print(f\"\\n**Searching for scientific name = {row[\"scientificName\"]}**\")\n",
     "    resp = pyworms.aphiaRecordsByMatchNames(row[\"scientificName\"])[0][0]\n",
     "    pprint.pprint(resp)\n",
     "    lut_worms.loc[index, \"acceptedname\"] = resp[\"valid_name\"]\n",
@@ -1598,7 +1598,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.5"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,