Lancet release v1.0.7
Minor release that:
- supports a new command line parameter to request only primary alignments to be used for variant calling;
- supports complex events: multiple consecutive snv, ins, del at a locus reported in the output VCF a a single replacement operation event;
- includes a new parameter to control AS and XS difference when selecting read alignments;
- implements better type support when extracting tags from sam alignments;
- automatically turns off the active region module if MD tags are missing from the BAM file;
- includes updated APIs: htslib v1.8 and bamtools v2.5.1;