Norovirus_manuscript

Scripts used to analyze metagenomes from the Norovirus challenge study

Name		Name	Last commit message	Last commit date
Latest commit History 49 Commits
Baselines_Subgroups_clustermap_Fig3A.ipynb		Baselines_Subgroups_clustermap_Fig3A.ipynb
KOs_signifdiff_heatmap_Fig3B.ipynb		KOs_signifdiff_heatmap_Fig3B.ipynb
KOs_to_functions.ipynb		KOs_to_functions.ipynb
MAGs_KOs_clustermap_Fig5.ipynb		MAGs_KOs_clustermap_Fig5.ipynb
Noro_alphadiv_baselines_fig1.R		Noro_alphadiv_baselines_fig1.R
Noro_alphadiv_timecourse_figS2.R		Noro_alphadiv_timecourse_figS2.R
Noro_baselines_16S_all.csv		Noro_baselines_16S_all.csv
Noro_baselines_meta.csv		Noro_baselines_meta.csv
Noro_baselines_taxonomy.csv		Noro_baselines_taxonomy.csv
Noro_mash_lines.R		Noro_mash_lines.R
Noro_mash_slopes.R		Noro_mash_slopes.R
README.md		README.md
all_k25_full_mash.csv		all_k25_full_mash.csv
bracken_for_lefse.ipynb		bracken_for_lefse.ipynb
mash_nmds.R		mash_nmds.R
noro_mash_T0.csv		noro_mash_T0.csv
noro_mash_T0_all_slopes.csv		noro_mash_T0_all_slopes.csv
vsearch_out_format_for_merge.ipynb		vsearch_out_format_for_merge.ipynb
vsearch_out_merge.ipynb		vsearch_out_merge.ipynb

Provide feedback