Skip to content

nthndy/octopuslite-reader

 
 

Repository files navigation

DaskOctopus

Load multidimensional image stacks using lazy loading.

A simple class to load OctopusLite data from a directory. Caches data once
it is loaded to prevent excessive I/O to the data server. Can directly
address different channels using the `Channels` enumerator.

Usage
-----
>>> from octopuslite import DaskOctopus, MetadataParser
>>> images =  DaskOctopus(
    path = '/path/to/your/data/',
    crop = (1200,1600),
    transforms = 'path/to/transform_array.npy',
    remove_background = True,
    parser = MetadataParser.OCTOPUS,
)
>>> gfp = images["GFP"]

About

reader for octopuslite data

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Python 100.0%