Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Better handling of assembled contigs as input #25

Open
1 of 3 tasks
nspies opened this issue Jun 21, 2017 · 1 comment
Open
1 of 3 tasks

Better handling of assembled contigs as input #25

nspies opened this issue Jun 21, 2017 · 1 comment
Assignees
@nspies
Labels
core enhancement

Comments

@nspies
Copy link
Owner

nspies commented Jun 21, 2017 •
edited
Loading

  • need to be able to specify the alignment distance
  • check whether the alignments actually make sense - probably comparison between bwa and ssw would be informative
  • deal with multiple aligning segments better? this may not be trivial though
  • change x-axis ticks when using --also-plot-context  #24
@nspies nspies self-assigned this Jun 21, 2017
nspies pushed a commit that referenced this issue Jun 27, 2017
adding option to specify re-alignment distance; see #25
23415c0
@nspies
Copy link
Owner Author

nspies commented Jul 21, 2017

@jzook when you're back on the job, can you email me some contigs and commands you've tried to use here? ideally so it runs on our cluster here so I don't have to move data around

@nspies nspies added the core label Jul 21, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@nspies nspies

Labels
core enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@nspies