fix(core): generate npm lockfile with correct hoisted dependencies

[leosvelperez]

Failing new test case covering the broken scenario: https://staging.nx.app/runs/s0YaQGUVgq/task/nx%3Atest

Current Behavior

Expected Behavior

Related Issue(s)

Fixes #22386

[vercel]

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1 Ignored Deployment

Name	Status	Preview	Updated (UTC)
nx-dev	⬜️ Ignored (Inspect)	Visit Preview	Jun 13, 2024 10:44am

[nx-cloud]

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✅ Successfully ran 6 targets

• nx affected --targets=e2e,e2e-ci --base=c86de97b1259c7824c371a7fb9b1483e7ce0e3e5 --head=a88752500e6e4747e64fc373cf58ab885ae6725e --parallel=1
• nx affected --targets=lint,test,build --base=c86de97b1259c7824c371a7fb9b1483e7ce0e3e5 --head=a88752500e6e4747e64fc373cf58ab885ae6725e --parallel=3
• nx run-many -t check-imports check-commit check-lock-files check-codeowners documentation --parallel=1 --no-dte
• nx-cloud record -- nx format:check --base=c86de97b1259c7824c371a7fb9b1483e7ce0e3e5 --head=a88752500e6e4747e64fc373cf58ab885ae6725e
• nx documentation --no-dte
• nx affected -t e2e-macos-ci --parallel=1 --base=c86de97b1259c7824c371a7fb9b1483e7ce0e3e5 --head=a88752500e6e4747e64fc373cf58ab885ae6725e

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[github-actions]

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