fix(core): fix alias package parsing and pruning for npm (#23474)

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## Current Behavior
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Fixes #22098
Fixes #21180
Fixes #21009

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Co-authored-by: James Henry <[email protected]>

packages/nx/src/plugins/js/lock-file/__fixtures__/mixed-keys/package.json

@@ -1,5 +1,6 @@
 {
   "name": "something",
+  "version": "0.0.0",
   "dependencies": {
     "@isaacs/cliui": "^8.0.2",
     "cliui": "^8.0.1"