Epinano v1.2.4

Update Epinano_Variants.py from Epinano_Variants.dev.py
Key features:

• removes -type transcriptome/genome (1strand/2strands) from command line
• removes dependency on sam2tsv

EpiNano 1.2.3

• This release includes a new version of Slide_Variants.py script to decrease computing time.

EpiNano 1.2.2

• This release includes slimmer version of EpiNano_Variants.py(slim_epinano_variants.py) which is faster and requires less resources.
• This script is located in the /misc folder (https://github.com/novoalab/EpiNano/blob/master/misc/slim_epinano_variants.py)

Epinano1.2.1

Minor updates/clarifications in README file

Epinano 1.2.0

EpiNano 1.2 RELEASE

• Includes pretrained m6A models derived from sequences base-called with Guppy v 3.1.5
• Pretrained models can also be used to detect other RNA modifications (tested for pseudouridine, other modifications: not tested).
• This version of EpiNano allows to make predictions using two different strategies: EpiNano-Error and EpiNano-SVM.
• This version now includes modules for visualizing your RNA modification predictions (EpiNano_Plot)

EpiNano 1.1.1

BUG FIX: Change insertion frequency computation

• This is the version included in MasterOfPores nextflow workflow

EpiNano 1.0

• Original version used in Liu*, Begik* et al. Nature Comm 2019
• Includes pretrained models for data basecalled with Albacore 2.1.7 (deprecated basecaller - updated Guppy models are released in EpiNano 1.2.+).

EpiNano 1.1

• Upgraded version, which is written in python3 (instead of 2.7)