FIX: Add environment argument to TaskBase._run_task() and Workflow subclass #1229

	name: Singularity

	on:
	push:
	branches:
	- master
	pull_request:

	jobs:
	build:
	name: Build
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.8, 3.9, "3.10", "3.11"]
	fail-fast: False

	steps:
	- name: Set env
	run: \|
	echo "RELEASE_VERSION=v3.7.1" >> $GITHUB_ENV
	echo "NO_ET=TRUE" >> $GITHUB_ENV
	- name: Setup Singularity
	uses: actions/checkout@v4
	with:
	repository: hpcng/singularity
	ref: 'v3.7.1'
	path: 'singularity'
	- name: Setup GO
	uses: actions/setup-go@v5
	with:
	go-version: '^1.13'
	- name: Install OS deps
	run: \|
	sudo apt-get update
	sudo apt-get install flawfinder squashfs-tools uuid-dev libuuid1 libffi-dev libssl-dev libssl1.1 \
	libarchive-dev libgpgme11-dev libseccomp-dev wget gcc make pkg-config -y
	- name: Build
	run: \|
	cd singularity
	./mconfig --without-suid -p /usr/local/
	make -C ./builddir
	sudo make -C ./builddir install
	cd ..
	- name: Echo singularity version
	run: \|
	echo ${{ github.ref }}
	singularity --version


	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Update build tools
	run: python -m pip install --upgrade pip


	- name: Checkout Pydra repo
	uses: actions/checkout@v4
	with:
	repository: ${{ github.repository }}
	- name: Install pydra (test)
	run: pip install -e ".[test]"


	- name: Pytest
	run: pytest -vs --cov pydra --cov-config .coveragerc --cov-report xml:cov.xml pydra/engine/tests/test_singularity.py
	- name: Upload to codecov
	run: codecov -f cov.xml -F unittests -e GITHUB_WORKFLOW

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